RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJNA436017", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 8 ✖

tax_kingdom 1

  • Bacillati · 8 ✖

bioproject 1

  • PRJNA436017 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4917094 4917094 PRJNA436017_P_NODE_10704_length_262_cov_9.031111_g10406_i0 PRJNA436017 10704 262 9.031111 23.66151082 Chthonomonas 1077265 Bacteria Bacteria 220 6.19e-53   NTclustered gi|526641997|ref|NR_103994.1| 454171 g10406 i0 85.068 156.450381679389 221 27 82 5 45 260 1547 1766 Chthonomonas calidirosea strain T49 23S ribosomal RNA gene, complete sequence blastn 40990 220 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae Chthonomonas Chthonomonas calidirosea
8741940 8741940 PRJNA436017_P_NODE_2507_length_596_cov_20.685152_g2252_i0 PRJNA436017 2507 596 20.685152 123.28350592 Fimbriimonas 1005038 Bacteria Bacteria 917 0   NTclustered gi|663071213|gb|CP007139.1| 661478 g2252 i0 94.755 298.818791946309 591 28 99 3 8 596 26878 27467 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 178096 917 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
17007895 17007895 PRJNA436017_P_NODE_12894_length_234_cov_1.751269_g12596_i0 PRJNA436017 12894 234 1.751269 4.09796946 Fimbriimonas ginsengisoli 1005039 Bacteria Bacteria 143 1.21e-29   NTclustered gi|663071213|gb|CP007139.1| 661478 g12596 i0 80.976 28.7435897435897 205 18 87 12 6 209 2045116 2045300 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 6726 143 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
17008293 17008293 PRJNA436017_P_NODE_8534_length_300_cov_3.224335_g8236_i0 PRJNA436017 8534 300 3.224335 9.673005 Fimbriimonadales bacterium 2682145 Bacteria Bacteria 141 5.790000000000001e-29   NTclustered gi|2314715370|dbj|AP024673.1| 2682145 g8236 i0 86.719 0.713333333333333 128 15 42 2 91 217 316601 316727 MAG: Fimbriimonadales bacterium KatS3mg018 DNA, complete genome blastn 214 141 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales     Fimbriimonadales bacterium
20832500 20832500 PRJNA436017_P_NODE_24217_length_166_cov_1.162791_g23919_i0 PRJNA436017 24217 166 1.162791 1.93023306 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 104 3.78e-18   NTclustered gi|2874253701|emb|OY969427.1| 157466 g23919 i0 85.437 95.9939759036145 103 12 61 3 63 163 3409556 3409657 MAG: uncultured Armatimonadetes bacterium isolate MFD09671.bin.1.19 genome assembly, chromosome: 1 blastn 15935 104 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
21490913 21490913 PRJNA436017_P_NODE_5817_length_372_cov_4.128358_g5521_i0 PRJNA436017 5817 372 4.128358 15.35749176 Chthonomonas 1077265 Bacteria Bacteria 337 8.719999999999998e-88   NTclustered gi|526641997|ref|NR_103994.1| 454171 g5521 i0 87.291 316.870967741935 299 33 80 5 3 299 1827 1532 Chthonomonas calidirosea strain T49 23S ribosomal RNA gene, complete sequence blastn 117876 337 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae Chthonomonas Chthonomonas calidirosea
24657318 24657318 PRJNA436017_P_NODE_6940_length_338_cov_21.584718_g6643_i0 PRJNA436017 6940 338 21.584718 72.95634684 Fimbriimonas sp. 1936159 Bacteria Bacteria 261 4.87e-65   NTclustered gi|2778022393|emb|OZ123194.1| 1936159 g6643 i0 86.42 33.9733727810651 243 28 71 4 99 338 1690473 1690233 MAG: Fimbriimonas sp. isolate MsE-30jul19-LR-01 genome assembly, chromosome: 1 blastn 11483 261 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.
31434598 31434598 PRJNA436017_P_NODE_10576_length_264_cov_3.057269_g10278_i0 PRJNA436017 10576 264 3.057269 8.07119016 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 42.7 0.0415   NR MBX3097562.1 2682144 g10278 i0 27.8 0.897727272727273 79 43 77.3 2 25 228 120 195 MBX3097562.1 ThuA domain-containing protein [Fimbriimonadaceae bacterium] diamond 237 42.7 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;