RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA436017", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA436017 · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4257916 4257916 PRJNA436017_P_NODE_284_length_1481_cov_57.368421_g229_i0 PRJNA436017 284 1481 57.368421 849.62631501 uncultured delta proteobacterium HF0010_01J10 710820 Bacteria Bacteria 1094 0   NTclustered gi|297180392|gb|GU474842.1| 710820 g229 i0 81.991 443.119513841999 1316 211 88 22 3 1306 13418 14719 Uncultured delta proteobacterium HF0010_01J10 genomic sequence blastn 656260 1094 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0010_01J10
28875862 28875862 PRJNA436017_P_NODE_13168_length_231_cov_2.206186_g12870_i0 PRJNA436017 13168 231 2.206186 5.09628966 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-12 2013739 Bacteria Bacteria 64.7 5.48e-11   NR PKN70815.1 2013739 g12870 i0 40 1.94805194805195 75 44 97.4 1 227 3 61 134 PKN70815.1 MAG: acyl-CoA thioesterase [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-12] diamond 450 64.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;