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contig_metadata

19 rows where bioproject = "PRJNA436017" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 19 ✖

bioproject 1

  • PRJNA436017 · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7467195 7467195 PRJNA436017_P_NODE_7446_length_325_cov_6.295139_g7149_i0 PRJNA436017 7446 325 6.295139 20.45920175 Eukaryota 2759 Plants Plants 464 3.3099999999999995e-126   NTclustered gi|1714003650|gb|MN243923.1| 3079 g7149 i0 92.901 99.6184615384615 324 15 99 3 2 325 821 506 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 32376 464 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
8084279 8084279 PRJNA436017_P_NODE_6567_length_349_cov_2.051282_g6270_i0 PRJNA436017 6567 349 2.051282 7.15897418 [Myrmecia] bisecta 41462 Plants Plants 112 6.18e-30   NR KAK9808664.1 41462 g6270 i0 66.2 2.03724928366762 77 26 66.2 0 302 72 8 84 KAK9808664.1 hypothetical protein WJX72_001536 [[Myrmecia] bisecta] diamond 711 112 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
9358831 9358831 PRJNA436017_P_NODE_18808_length_189_cov_1.171053_g18510_i0 PRJNA436017 18808 189 1.171053 2.21329017 Chaetophoropsis cf. attenuata FACHB-2291 2725790 Plants Plants 172 1.19e-38   NTclustered gi|1831430457|gb|MN701986.1| 2725790 g18510 i0 83.77 136.772486772487 191 21 97 8 6 189 4604 4417 Chaetophoropsis cf. attenuata FACHB-2291 chloroplast, complete genome blastn 25850 172 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chaetophorales Chaetophoraceae Chaetophoropsis Chaetophoropsis cf. attenuata FACHB-2291
9359045 9359045 PRJNA436017_P_NODE_4388_length_441_cov_2.675743_g4095_i0 PRJNA436017 4388 441 2.675743 11.80002663 Picochlorum sp. BPE23 2696299 Plants Plants 194 1.13e-57   NR KAI8107334.1 2696299 g4095 i0 69.6 12.1904761904762 138 42 93.9 0 27 440 1 138 KAI8107334.1 hypothetical protein M9434_001976 [Picochlorum sp. BPE23] diamond 5376 194 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Picochlorum Picochlorum sp. BPE23
11292298 11292298 PRJNA436017_P_NODE_7809_length_316_cov_13.899642_g7512_i0 PRJNA436017 7809 316 13.899642 43.92286872 Eukaryota 2759 Plants Plants 584 2.359999999999999e-162   NTclustered gi|1714003650|gb|MN243923.1| 3079 g7512 i0 100 99.9335443037975 316 0 100 0 1 316 821 506 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 31579 584 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
18282577 18282577 PRJNA436017_P_NODE_5315_length_394_cov_1.795518_g5019_i0 PRJNA436017 5315 394 1.795518 7.07434092 Eukaryota 2759 Plants Plants 107 2.06e-26   NR CAL5219011.1 1274662 g5019 i0 56.6 5.3756345177665 106 41 76.9 1 8 310 83 188 CAL5219011.1 g767 [Coccomyxa viridis] diamond 2118 108 0.990740740740741 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis
18940462 18940462 PRJNA436017_P_NODE_10555_length_264_cov_6632.859031_g10257_i0 PRJNA436017 10555 264 6632.859031 17510.74784184 root 1 Root_unresolved Root_unresolved 416 7.419999999999999e-112   NTclustered gi|2507491536|dbj|LC749599.1| 51714 g10257 i0 95.113 100.912878787879 266 10 100 3 1 264 112046 111782 Volvox africanus NIES-4468 DNA, SD-like region blastn 26641 416 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox africanus
21490889 21490889 PRJNA436017_P_NODE_29177_length_151_cov_1.368421_g28879_i0 PRJNA436017 29177 151 1.368421 2.06631571 root 1 Root_unresolved Root_unresolved 257 2.43e-64   NTclustered gi|1279575454|gb|MF683078.1| 44745 g28879 i0 97.351 81.7615894039735 151 4 100 0 1 151 68 218 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 12346 257 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
24656967 24656967 PRJNA436017_P_NODE_14280_length_220_cov_2.289617_g13982_i0 PRJNA436017 14280 220 2.289617 5.0371574 Polulichloris maxima 2704661 Plants Plants 97.1 8.87e-16   NTclustered gi|2473928686|ref|NC_072905.1| 2704661 g13982 i0 88.608 0.359090909090909 79 9 36 0 54 132 127394 127472 Polulichloris maxima clone L123 chloroplast, complete genome blastn 79 97.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Polulichloris Polulichloris maxima
27281994 27281994 PRJNA436017_P_NODE_8883_length_293_cov_1.679688_g8585_i0 PRJNA436017 8883 293 1.679688 4.92148584 Eukaryota 2759 Plants Plants 110 6.04e-29   NR KAK2079218.1 3111 g8585 i0 69.6 35.9078498293515 79 23 80.9 1 292 56 21 98 KAK2079218.1 40s ribosomal protein L44e [Prototheca wickerhamii] diamond 10521 111 0.990990990990991 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
27360474 27360474 PRJNA436017_P_NODE_13123_length_232_cov_1.153846_g12825_i0 PRJNA436017 13123 232 1.153846 2.67692272 Prototheca wickerhamii 3111 Plants Plants 65.1 2.09e-10   NR KAK2076131.1 3111 g12825 i0 49.2 0.84051724137931 65 33 84.1 0 195 1 1 65 KAK2076131.1 hypothetical protein QBZ16_001063 [Prototheca wickerhamii] diamond 195 65.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
29918030 29918030 PRJNA436017_P_NODE_23231_length_169_cov_1.757576_g22933_i0 PRJNA436017 23231 169 1.757576 2.97030344 Volvox reticuliferus 1737510 Plants Plants 46.2 3.88e-4   NR GIL81710.1 1737510 g22933 i0 60 1.24260355029586 35 14 62.1 0 169 65 119 153 GIL81710.1 hypothetical protein Vretifemale_10726, partial [Volvox reticuliferus] diamond 210 46.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox reticuliferus
30201969 30201969 PRJNA436017_P_NODE_1072_length_904_cov_3.083045_g909_i0 PRJNA436017 1072 904 3.083045 27.8707268 Coccomyxa subellipsoidea C-169 574566 Plants Plants 192 9.859999999999996e-55   NR XP_005650389.1 574566 g909 i0 53.2 1.95796460176991 203 94 67 1 899 294 152 354 XP_005650389.1 hypothetical protein COCSUDRAFT_52595 [Coccomyxa subellipsoidea C-169] diamond 1770 192 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
30439994 30439994 PRJNA436017_P_NODE_10013_length_273_cov_1.644068_g9715_i0 PRJNA436017 10013 273 1.644068 4.48830564 Chlamydomonadales 3042 Plants Plants 83.2 5.15e-17   NR KAG2482049.1 47281 g9715 i0 50 11.6263736263736 86 41 93.4 2 8 262 5 89 KAG2482049.1 hypothetical protein HYH03_018999 [Edaphochlamys debaryana] diamond 3174 83.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales   Edaphochlamys Edaphochlamys debaryana
31655899 31655899 PRJNA436017_P_NODE_4117_length_456_cov_3.040573_g3826_i0 PRJNA436017 4117 456 3.040573 13.86501288 Monoraphidium neglectum 145388 Plants Plants 121 3.4799999999999993e-31   NR XP_013906152.1 145388 g3826 i0 56.6 0.894736842105263 136 51 88.8 4 455 51 94 222 XP_013906152.1 60S ribosomal protein L6 [Monoraphidium neglectum] diamond 408 121 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
32162423 32162423 PRJNA436017_P_NODE_28758_length_152_cov_1.356522_g28460_i0 PRJNA436017 28758 152 1.356522 2.06191344 Pleodorina starrii 330485 Plants Plants 59.3 1.51e-8   NR GLC41738.1 330485 g28460 i0 54 1.97368421052632 50 23 98.7 0 2 151 213 262 GLC41738.1 hypothetical protein PLESTM_001234400 [Pleodorina starrii] diamond 300 59.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Pleodorina Pleodorina starrii
32210398 32210398 PRJNA436017_P_NODE_13698_length_226_cov_1.433862_g13400_i0 PRJNA436017 13698 226 1.433862 3.24052812 Eukaryota 2759 Plants Plants 80.1 4.85e-17   NR CAD7699508.1 121088 g13400 i0 50 5.8938053097345096 74 37 98.2 0 1 222 67 140 CAD7699508.1 unnamed protein product [Ostreobium quekettii] diamond 1332 80.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Ostreobiaceae Ostreobium Ostreobium quekettii
32793713 32793713 PRJNA436017_P_NODE_23000_length_170_cov_1.466165_g22702_i0 PRJNA436017 23000 170 1.466165 2.4924805 Chlorochytrium lemnae 1199099 Plants Plants 87 2.31e-20   NR CCI69515.1 1199099 g22702 i0 73.2 1.97647058823529 56 15 98.8 0 168 1 31 86 CCI69515.1 40S ribosomal protein S9, partial [Chlorochytrium lemnae] diamond 336 87 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlorochytriaceae Chlorochytrium Chlorochytrium lemnae
32825491 32825491 PRJNA436017_P_NODE_13200_length_231_cov_1.608247_g12902_i0 PRJNA436017 13200 231 1.608247 3.71505057 Chlorella desiccata (nom. nud.) 1650286 Plants Plants 65.1 4.44e-10   NR KAG7671286.1 1650286 g12902 i0 46.8 1.98701298701299 79 40 100 1 231 1 167 245 KAG7671286.1 hypothetical protein KSW81_003424 [Chlorella desiccata (nom. nud.)] diamond 459 65.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris sp. 'desiccata'

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;