RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA436017", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA436017 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28829034 28829034 PRJNA436017_P_NODE_17668_length_195_cov_1.481013_g17370_i0 PRJNA436017 17668 195 1.481013 2.88797535 Bacteria 2 Bacteria Bacteria 54.3 9.85e-8   NR OGX10738.1 1801835 g17370 i0 45.8 1.47692307692308 48 26 73.8 0 2 145 28 75 OGX10738.1 MAG: hypothetical protein A2351_07030 [Omnitrophica bacterium RIFOXYB12_FULL_50_7] diamond 288 54.3 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Omnitrophica bacterium RIFOXYB12_FULL_50_7
30787397 30787397 PRJNA436017_P_NODE_1874_length_690_cov_8.157734_g1644_i0 PRJNA436017 1874 690 8.157734 56.2883646 Pseudomonadati 3379134 Bacteria Bacteria 184 6.089999999999999e-55   NR MCM8775297.1 2035772 g1644 i0 47.4 4.14347826086957 192 99 83.5 2 18 593 1 190 MCM8775297.1 NAD(P)H-dependent oxidoreductase [Candidatus Omnitrophota bacterium] diamond 2859 184 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
31719362 31719362 PRJNA436017_P_NODE_27477_length_156_cov_0.983193_g27179_i0 PRJNA436017 27477 156 0.983193 1.53378108 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 82 4.07e-19   NR HDZ77250.1 2035772 g27179 i0 68.6 3.92307692307692 51 16 98.1 0 155 3 10 60 HDZ77250.1 phosphoglycerate kinase [Candidatus Omnitrophota bacterium] diamond 612 82 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;