RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

14 rows where bioproject = "PRJNA436017", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 14 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 14 ✖

bioproject 1

  • PRJNA436017 · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
430897 430897 PRJNA436017_P_NODE_29181_length_151_cov_1.368421_g28883_i0 PRJNA436017 29181 151 1.368421 2.06631571 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 102 6.3499999999999995e-25   NR KAH6572344.1 1357716 g28883 i0 91.7 0.95364238410596 48 4 95.4 0 3 146 71 118 KAH6572344.1 hypothetical protein BASA62_003436 [Batrachochytrium salamandrivorans] diamond 144 102 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
8084201 8084201 PRJNA436017_P_NODE_29267_length_151_cov_1.210526_g28969_i0 PRJNA436017 29267 151 1.210526 1.82789426 Rhizophydiales sp. 2011922 Fungi Fungi 150 4.2499999999999996e-32   NTclustered gi|1866582663|gb|MT730838.1| 2011922 g28969 i0 88.372 112.867549668874 129 9 85 2 23 151 4152 4030 Rhizophydiales sp. isolate JEL0830 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17043 150 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales     Rhizophydiales sp.
10634524 10634524 PRJNA436017_P_NODE_13489_length_228_cov_1.633508_g13191_i0 PRJNA436017 13489 228 1.633508 3.72439824 Gromochytrium mamkaevae 1486924 Fungi Fungi 97.1 9.26e-16   NTclustered gi|612507318|gb|KF586842.1| 1486924 g13191 i0 96.552 8.23245614035088 58 2 25 0 7 64 6188 6131 Gromochytrium mamkaevae strain CALU x-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1877 97.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Gromochytriales Gromochytriaceae Gromochytrium Gromochytrium mamkaevae
13184387 13184387 PRJNA436017_P_NODE_1831_length_700_cov_7.224736_g1604_i0 PRJNA436017 1831 700 7.224736 50.573152 Spizellomyces punctatus 109760 Fungi Fungi 65.8 8.98e-6   NTclustered gi|1027029571|ref|XR_001677165.1| 645134 g1604 i0 89.286 1.70142857142857 56 1 12 3 272 327 2853 2803 Spizellomyces punctatus DAOM BR117 28S ribosomal RNA (SPPG_11007), partial rRNA blastn 1191 65.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
18282583 18282583 PRJNA436017_P_NODE_5575_length_382_cov_2.927536_g5279_i0 PRJNA436017 5575 382 2.927536 11.18318752 Neocallimastigaceae 29007 Fungi Fungi 147 6.009999999999999e-40   NR ORX72588.1 1754192 g5279 i0 68 3.23560209424084 103 29 80.9 1 381 73 269 367 ORX72588.1 S-adenosylmethionine synthase, partial [Anaeromyces robustus] diamond 1236 147 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Anaeromyces Anaeromyces robustus
20215194 20215194 PRJNA436017_P_NODE_10776_length_261_cov_8.571429_g10478_i0 PRJNA436017 10776 261 8.571429 22.37142969 Alphamycetaceae 1167809 Fungi Fungi 200 8.029999999999999e-47   NTclustered gi|2897839614|gb|CP161932.1| 109871 g10478 i0 93.333 57.5900383141762 135 9 52 0 125 259 1053741 1053607 Batrachochytrium dendrobatidis strain JEL423 chromosome 10 blastn 15031 202 0.99009900990099 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis
26648916 26648916 PRJNA436017_P_NODE_19781_length_184_cov_1.047619_g19483_i0 PRJNA436017 19781 184 1.047619 1.92761896 Rhizophydiales 451442 Fungi Fungi 58.9 3.12e-8   NR KAI8906014.1 382530 g19483 i0 50 1.85869565217391 52 26 84.8 0 184 29 271 322 KAI8906014.1 isoprenoid synthase domain-containing protein [Gorgonomyces haynaldii] diamond 342 58.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Gorgonomycetaceae Gorgonomyces Gorgonomyces haynaldii
27928701 27928701 PRJNA436017_P_NODE_13085_length_232_cov_1.584615_g12787_i0 PRJNA436017 13085 232 1.584615 3.6763068 Physocladia obscura 109957 Fungi Fungi 68.9 1.62e-11   NR KAJ3126330.1 109957 g12787 i0 41.6 2.01724137931034 77 45 99.6 0 2 232 259 335 KAJ3126330.1 hypothetical protein HK100_010315 [Physocladia obscura] diamond 468 68.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Physocladia Physocladia obscura
27928713 27928713 PRJNA436017_P_NODE_7165_length_333_cov_1.861486_g6868_i0 PRJNA436017 7165 333 1.861486 6.19874838 Phlyctochytrium bullatum 1352834 Fungi Fungi 102 1.23e-22   NR KAJ3117658.1 1352834 g6868 i0 52 0.918918918918919 102 49 91.9 0 307 2 905 1006 KAJ3117658.1 60S ribosomal protein L14 [Phlyctochytrium bullatum] diamond 306 102 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Phlyctochytrium Phlyctochytrium bullatum
28481884 28481884 PRJNA436017_P_NODE_7266_length_330_cov_1.877133_g6969_i0 PRJNA436017 7266 330 1.877133 6.1945389 Fungi 4751 Fungi Fungi 140 8.21e-40   NR KAJ3127717.1 109957 g6969 i0 74.2 36.2636363636364 97 25 88.2 0 293 3 1 97 KAJ3127717.1 60S ribosomal protein L12 [Physocladia obscura] diamond 11967 140 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Physocladia Physocladia obscura
29696450 29696450 PRJNA436017_P_NODE_23330_length_169_cov_1.174242_g23032_i0 PRJNA436017 23330 169 1.174242 1.98446898 Hyaloraphidium curvatum 82268 Fungi Fungi 78.2 4.39e-15   NR KAI9024085.1 82268 g23032 i0 66.1 31.810650887574 56 19 99.4 0 169 2 425 480 KAI9024085.1 putative myo-inositol-phosphate synthase [Hyaloraphidium curvatum] diamond 5376 78.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales   Hyaloraphidium Hyaloraphidium curvatum
30865633 30865633 PRJNA436017_P_NODE_14314_length_220_cov_1.693989_g14016_i0 PRJNA436017 14314 220 1.693989 3.7267758 Polychytrium aggregatum 110093 Fungi Fungi 60.8 1.16e-8   NR XP_052965857.1 110093 g14016 i0 52.7 1.00909090909091 74 34 99.5 1 1 219 265 338 XP_052965857.1 elongation factor EF-3 [Polychytrium aggregatum] diamond 222 60.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
32194001 32194001 PRJNA436017_P_NODE_6138_length_362_cov_1.686154_g5842_i0 PRJNA436017 6138 362 1.686154 6.10387748 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 125 5.15e-34   NR KAH9259198.1 1357716 g5842 i0 55.3 3.49723756906077 103 46 85.4 0 34 342 38 140 KAH9259198.1 hypothetical protein BASA82_001271 [Batrachochytrium salamandrivorans] diamond 1266 125 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
32478915 32478915 PRJNA436017_P_NODE_4459_length_437_cov_2.525000_g4164_i0 PRJNA436017 4459 437 2.525 11.03425 Gorgonomyces haynaldii 382530 Fungi Fungi 100 9.25e-23   NR KAI8911730.1 382530 g4164 i0 61.4 0.693363844393593 101 33 69.3 2 303 1 4 98 KAI8911730.1 50S ribosomal protein L30e-like protein [Gorgonomyces haynaldii] diamond 303 100 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Gorgonomycetaceae Gorgonomyces Gorgonomyces haynaldii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;