RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA436017", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA436017 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4257693 4257693 PRJNA436017_P_NODE_17764_length_194_cov_20.585987_g17466_i0 PRJNA436017 17764 194 20.585987 39.93681478 Rhodothermales bacterium 2306054 Bacteria Bacteria 196 7.309999999999999e-46   NTclustered gi|2893358395|emb|OZ220686.1| 2306054 g17466 i0 85.128 241.051546391753 195 25 99 3 3 194 1668841 1668648 MAG: Rhodothermales bacterium isolate 312d6c01-350c-491a-87ad-f3958f88b76c genome assembly, chromosome: 1 blastn 46764 196 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
8084246 8084246 PRJNA436017_P_NODE_4927_length_411_cov_13.050802_g4631_i0 PRJNA436017 4927 411 13.050802 53.63879622 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 518 3.24e-142   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g4631 i0 89.372 371.158150851582 414 41 100 2 1 411 1307928 1308341 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 152546 518 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
11909343 11909343 PRJNA436017_P_NODE_10030_length_272_cov_29.480851_g9732_i0 PRJNA436017 10030 272 29.480851 80.18791472 Rubrivirga sp. IMCC45206 3391614 Bacteria Bacteria 276 1.36e-69   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g9732 i0 84.982 190.617647058824 273 39 100 2 1 272 3830751 3830480 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 51848 276 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;