RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA436017", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA436017 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1088972 1088972 PRJNA436017_P_NODE_10781_length_261_cov_5.941964_g10483_i0 PRJNA436017 10781 261 5.941964 15.50852604 Pseudomonadati 3379134 Bacteria Bacteria 315 2.75e-81   NTclustered gi|1938788434|gb|CP054181.1| 2053306 g10483 i0 93.78 466.015325670498 209 13 80 0 1 209 1604362 1604570 Ignavibacteria bacterium isolate H1_BAC2 chromosome blastn 121630 315 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
30201977 30201977 PRJNA436017_P_NODE_25612_length_161_cov_1.258065_g25314_i0 PRJNA436017 25612 161 1.258065 2.02548465 Ignavibacteria bacterium 2053306 Bacteria Bacteria 85.9 7.65e-18   NR MBK8549759.1 2053306 g25314 i0 68.5 1.00621118012422 54 16 98.8 1 159 1 3034 3087 MBK8549759.1 non-ribosomal peptide synthase/polyketide synthase [Ignavibacteria bacterium] diamond 162 85.9 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
30612812 30612812 PRJNA436017_P_NODE_10813_length_261_cov_1.861607_g10515_i0 PRJNA436017 10813 261 1.861607 4.85879427 Ignavibacteriales bacterium 2049428 Bacteria Bacteria 49.3 3.51e-5   NR RJP65684.1 2049428 g10515 i0 44.1 0.67816091954023 59 26 66.7 2 176 3 1 53 RJP65684.1 MAG: cupin domain-containing protein [Ignavibacteriales bacterium] diamond 177 49.3 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;