RNAquarium Metadata Server
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contig_metadata

13 rows where bioproject = "PRJNA436017", tax_clade = "Amoebozoa" and tax_phylum = "Evosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Evosea · 13 ✖

tax_clade 1

  • Amoebozoa · 13 ✖

bioproject 1

  • PRJNA436017 · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1705439 1705439 PRJNA436017_P_NODE_11702_length_249_cov_1.613208_g11404_i0 PRJNA436017 11702 249 1.613208 4.01688792 Tychosporium acutostipes 668358 Evosea other_Eukaryota 193 1.27e-44   NTclustered gi|256550195|gb|FJ792703.1| 668358 g11404 i0 89.677 58.9357429718875 155 10 61 3 97 249 160 10 Tychosporium acutostipes strain KE11AL small subunit ribosomal RNA gene, partial sequence blastn 14675 193 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Tychosporium Tychosporium acutostipes
1705677 1705677 PRJNA436017_P_NODE_24042_length_166_cov_1.813953_g23744_i0 PRJNA436017 24042 166 1.813953 3.01116198 Arcyria cinerea 137621 Evosea other_Eukaryota 302 1.2500000000000001e-77   NTclustered gi|2753773265|gb|PP982843.1| 137621 g23744 i0 99.398 97.3915662650602 166 1 100 0 1 166 338 503 Arcyria cinerea voucher TUF135974 small subunit ribosomal RNA gene, partial sequence blastn 16167 302 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Arcyria Arcyria cinerea
1705903 1705903 PRJNA436017_P_NODE_8742_length_296_cov_1.613900_g8444_i0 PRJNA436017 8742 296 1.6139 4.777144 Tychosporium acutostipes 668358 Evosea other_Eukaryota 172 2.0199999999999998e-38   NTclustered gi|2467140639|dbj|LC720133.1| 668358 g8444 i0 90.152 16.0067567567568 132 13 45 0 4 135 926 795 Tychosporium acutostipes YIP-60 gene for 18S rRNA, partial sequence blastn 4738 172 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Tychosporium Tychosporium acutostipes
2981472 2981472 PRJNA436017_P_NODE_21963_length_174_cov_2.021898_g21665_i0 PRJNA436017 21963 174 2.021898 3.51810252 Trichiida 208471 Evosea other_Eukaryota 105 7.78e-26   NR WLO97275.1 435425 g21665 i0 81 6 58 11 100 0 1 174 57 114 WLO97275.1 translation elongation factor 1-alpha, partial [Trichia sordida] diamond 1044 105 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Trichia Trichia sordida
5534757 5534757 PRJNA436017_P_NODE_8285_length_306_cov_4.107807_g7988_i0 PRJNA436017 8285 306 4.107807 12.56988942 root 1 Root_unresolved Root_unresolved 70.9 6.31e-13   NR XP_012757417.1 1410327 g7988 i0 73.8 15.6372549019608 42 11 41.2 0 2 127 109 150 XP_012757417.1 hypothetical protein SAMD00019534_026650, partial [Acytostelium subglobosum LB1] diamond 4785 70.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
11909442 11909442 PRJNA436017_P_NODE_14770_length_216_cov_2.033520_g14472_i0 PRJNA436017 14770 216 2.03352 4.3924032 Dictyostelium discoideum 44689 Evosea other_Eukaryota 250 6.3e-62   NTclustered gi|66813933|ref|XM_636054.1| 352472 g14472 i0 87.5 99.1388888888889 216 27 100 0 1 216 793 578 Dictyostelium discoideum AX4 hypothetical protein (act7) mRNA, complete cds blastn 21414 250 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
15733261 15733261 PRJNA436017_P_NODE_1413_length_795_cov_3.019789_g1216_i0 PRJNA436017 1413 795 3.019789 24.00732255 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 331 5.779999999999997e-106   NR BAF75925.1 5791 g1216 i0 62.5 6.23396226415094 272 94 100 2 795 1 203 473 BAF75925.1 heat shock protein 90, partial [Physarum polycephalum] diamond 4956 331 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
18282648 18282648 PRJNA436017_P_NODE_8795_length_295_cov_1.620155_g8497_i0 PRJNA436017 8795 295 1.620155 4.77945725 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 119 1.12e-31   NR PRP84035.1 1890364 g8497 i0 80.3 1.45423728813559 76 14 77.3 1 67 294 69 143 PRP84035.1 hypothetical protein PROFUN_08497 [Planoprotostelium fungivorum] diamond 429 119 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29128727 29128727 PRJNA436017_P_NODE_21849_length_175_cov_1.130435_g21551_i0 PRJNA436017 21849 175 1.130435 1.97826125 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 50.1 3.8e-5   NR KYQ88630.1 361077 g21551 i0 45.3 0.908571428571429 53 22 89.1 2 158 3 437 483 KYQ88630.1 AAA ATPase domain-containing protein [Tieghemostelium lacteum] diamond 159 50.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
29475488 29475488 PRJNA436017_P_NODE_28750_length_152_cov_1.356522_g28452_i0 PRJNA436017 28750 152 1.356522 2.06191344 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 71.6 6.86e-13   NR KYQ93252.1 361077 g28452 i0 62.5 0.947368421052632 48 18 94.7 0 9 152 223 270 KYQ93252.1 alanine transaminase [Tieghemostelium lacteum] diamond 144 71.6 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
31023728 31023728 PRJNA436017_P_NODE_14555_length_218_cov_1.779006_g14257_i0 PRJNA436017 14555 218 1.779006 3.8782330800000002 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 42.7 0.0052   NR KYQ91531.1 361077 g14257 i0 51.9 0.743119266055046 54 23 72.9 2 160 2 14 65 KYQ91531.1 40S ribosomal protein S28 [Tieghemostelium lacteum] diamond 162 42.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
32337140 32337140 PRJNA436017_P_NODE_19259_length_186_cov_2.348993_g18961_i0 PRJNA436017 19259 186 2.348993 4.36912698 Eumycetozoa 142796 Evosea other_Eukaryota 79.7 1.44e-15   NR KAF2078609.1 133409 g18961 i0 61.7 3.87096774193548 60 23 96.8 0 181 2 109 168 KAF2078609.1 hypothetical protein CYY_000109 [Polysphondylium violaceum] diamond 720 79.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
32762466 32762466 PRJNA436017_P_NODE_8080_length_311_cov_1.708029_g7783_i0 PRJNA436017 8080 311 1.708029 5.31197019 Dictyostelium purpureum 5786 Evosea other_Eukaryota 113 5.85e-28   NR XP_003287614.1 5786 g7783 i0 55.1 0.945337620578778 98 44 94.5 0 310 17 67 164 XP_003287614.1 calcium-regulated actin-bundling protein [Dictyostelium purpureum] diamond 294 113 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;