RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where bioproject = "PRJNA432257" and tax_phylum = "Euglenozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA432257 · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1703948 1703948 PRJNA432257_S_NODE_114522_length_162_cov_0.936000_g114141_i0 PRJNA432257 114522 162 0.936 1.51632 Trachelomonas volvocina 103340 Euglenozoa other_Eukaryota 52.8 0.013   NTclustered gi|836614780|ref|NC_027288.1| 103340 g114141 i0 100 0.172839506172839 28 0 17 0 111 138 71482 71455 Trachelomonas volvocina strain UTEX 1327 chloroplast, complete genome blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Trachelomonas Trachelomonas volvocina
9358071 9358071 PRJNA432257_S_NODE_63168_length_212_cov_1.194286_g62787_i0 PRJNA432257 63168 212 1.194286 2.53188632 Trypanosoma congolense 5692 Euglenozoa other_Eukaryota 58.4 4.01e-4   NTclustered gi|342183762|emb|HE575323.1| 1068625 g62787 i0 83.099 0.33490566037735803 71 5 32 6 1 68 1176924 1176990 Trypanosoma congolense IL3000 annotated genomic contig, chromosome 10 blastn 71 58.4 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma congolense
14458970 14458970 PRJNA432257_S_NODE_76992_length_196_cov_1.955975_g76611_i0 PRJNA432257 76992 196 1.955975 3.833711 Trypanosoma congolense 5692 Euglenozoa other_Eukaryota 76.8 1.01e-9   NTclustered gi|342185138|emb|HE575324.1| 1068625 g76611 i0 86.957 1.87244897959184 69 7 34 2 129 195 4576155 4576223 Trypanosoma congolense IL3000 annotated genomic contig, chromosome 11 blastn 367 76.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma congolense
15732970 15732970 PRJNA432257_S_NODE_94713_length_180_cov_33.286713_g94332_i0 PRJNA432257 94713 180 33.286713 59.9160834 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 58.4 3.28e-4   NTclustered gi|1031970258|gb|CP015692.1| 85057 g94332 i0 90.909 0.244444444444444 44 3 24 1 26 69 528689 528647 Trypanosoma cruzi cruzi strain Sylvio X10/cl1 chromosome TcI42, partial sequence blastn 44 58.4 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
17666198 17666198 PRJNA432257_S_NODE_123634_length_154_cov_0.974359_g123253_i0 PRJNA432257 123634 154 0.974359 1.50051286 Trypanosoma 5690 Euglenozoa other_Eukaryota 248 1.5e-61   NTclustered gi|62175522|gb|AC159414.1| 5691 g123253 i0 96.053 147.357142857143 152 6 99 0 3 154 65010 65161 Trypanosoma brucei chromosome 3 clone RPCI93-25B21, complete sequence blastn 22693 248 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma brucei
20831238 20831238 PRJNA432257_S_NODE_35337_length_263_cov_4.265487_g34956_i0 PRJNA432257 35337 263 4.265487 11.21823081 Trypanosoma congolense 5692 Euglenozoa other_Eukaryota 52.8 0.024   NTclustered gi|342183762|emb|HE575323.1| 1068625 g34956 i0 100 0.106463878326996 28 0 11 0 206 233 557227 557254 Trypanosoma congolense IL3000 annotated genomic contig, chromosome 10 blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma congolense
22105516 22105516 PRJNA432257_S_NODE_101798_length_175_cov_1.181159_g101417_i0 PRJNA432257 101798 175 1.181159 2.06702825 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 56.5 0.001   NTclustered gi|1624748415|ref|XM_029025136.1| 67003 g101417 i0 94.444 0.205714285714286 36 2 21 0 4 39 1332 1297 Trypanosoma theileri vacuolar protein sorting-associated protein 35 (TM35_000121610), partial mRNA blastn 36 56.5 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
22105673 22105673 PRJNA432257_S_NODE_115958_length_160_cov_2.398374_g115577_i0 PRJNA432257 115958 160 2.398374 3.8373984 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 52.8 0.013   NTclustered gi|1031970242|gb|CP015676.1| 85057 g115577 i0 96.875 0.2 32 0 19 1 7 37 182617 182586 Trypanosoma cruzi cruzi strain Sylvio X10/cl1 chromosome TcI26, partial sequence blastn 32 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
27581235 27581235 PRJNA432257_S_NODE_110944_length_165_cov_2.539062_g110563_i0 PRJNA432257 110944 165 2.539062 4.1894523 Strigomonas culicis 28005 Euglenozoa other_Eukaryota 52.4 5.25e-6   NR EPY35056.1 28005 g110563 i0 45.8 0.872727272727273 48 26 87.3 0 16 159 105 152 EPY35056.1 hypothetical protein STCU_01272 [Strigomonas culicis] diamond 144 52.4 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Strigomonas Strigomonas culicis
31940572 31940572 PRJNA432257_S_NODE_124877_length_153_cov_0.982759_g124496_i0 PRJNA432257 124877 153 0.982759 1.50362127 Diplonema ambulator 182243 Euglenozoa other_Eukaryota 43.1 0.00783   NR ACO50118.1 182243 g124496 i0 70.6 3.41176470588235 34 7 66.7 1 152 51 307 337 ACO50118.1 elongation factor 1 alpha-like protein, partial [Diplonema ambulator] diamond 522 43.1 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema ambulator

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;