RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA432257", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 5 ✖

tax_kingdom 1

  • Thermotogati · 5 ✖

bioproject 1

  • PRJNA432257 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27708060 27708060 PRJNA432257_S_NODE_125284_length_152_cov_2.365217_g124903_i0 PRJNA432257 125284 152 2.365217 3.59512984 Synergistales bacterium 2268201 Bacteria Bacteria 45.1 0.00117   NR NCB17331.1 2268201 g124903 i0 74.1 0.532894736842105 27 7 53.3 0 100 20 57 83 NCB17331.1 M20/M25/M40 family metallo-hydrolase [Synergistales bacterium] diamond 81 45.1 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales     Synergistales bacterium
29191698 29191698 PRJNA432257_S_NODE_39689_length_252_cov_2.283721_g39308_i0 PRJNA432257 39689 252 2.283721 5.75497692 Synergistaceae bacterium 2053624 Bacteria Bacteria 136 9.75e-38   NR MBP8633447.1 2053624 g39308 i0 92.3 0.928571428571429 78 6 92.9 0 17 250 1 78 MBP8633447.1 AzlC family ABC transporter permease [Synergistaceae bacterium] diamond 234 136 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
29570349 29570349 PRJNA432257_S_NODE_47170_length_236_cov_2.798995_g46789_i0 PRJNA432257 47170 236 2.798995 6.6056282 Aminivibrio sp. 1872489 Bacteria Bacteria 152 2.66e-42   NR WP_367337247.1 1872489 g46789 i0 90.8 0.966101694915254 76 7 96.6 0 7 234 341 416 WP_367337247.1 hypothetical protein [Aminivibrio sp.] diamond 228 152 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Aminivibrio Aminivibrio sp.
29981078 29981078 PRJNA432257_S_NODE_7811_length_446_cov_1.970660_g7490_i0 PRJNA432257 7811 446 1.97066 8.7891436 Synergistaceae bacterium 2053624 Bacteria Bacteria 111 9.63e-26   NR MDR3255266.1 2053624 g7490 i0 71.1 1.02242152466368 76 22 51.1 0 446 219 209 284 MDR3255266.1 phosphomannomutase/phosphoglucomutase [Synergistaceae bacterium] diamond 456 111 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
32210390 32210390 PRJNA432257_S_NODE_66898_length_207_cov_2.023529_g66517_i0 PRJNA432257 66898 207 2.023529 4.18870503 Thermovirga 336260 Bacteria Bacteria 106 1.23e-25   NR AER65906.1 580340 g66517 i0 85.9 3.69565217391304 64 9 92.8 0 16 207 143 206 AER65906.1 Alcohol dehydrogenase zinc-binding domain protein [Thermovirga lienii DSM 17291] diamond 765 106 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Thermovirgaceae Thermovirga Thermovirga lienii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;