contig_metadata
5 rows where bioproject = "PRJNA432257", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 429875 | 429875 | PRJNA432257_S_NODE_55501_length_222_cov_8.956757_g55120_i0 | PRJNA432257 | 55501 | 222 | 8.956757 | 19.88400054 | Lentivirus simimdef | 3418654 | Viruses | Viruses | 52.8 | 0.02 | NTclustered | gi|1877673191|gb|MK686514.1| | 11723 | g55120 | i0 | 100 | 0.126126126126126 | 28 | 0 | 13 | 0 | 151 | 178 | 6066 | 6093 | Simian immunodeficiency virus isolate E11.11D07 nonfunctional gag protein (gag) gene, complete sequence; nonfunctional pol protein (pol) gene, partial sequence; nonfunctional vif protein (vif) gene, complete sequence; vpx protein (vpx), vpr protein (vpr), tat protein (tat), and rev protein (rev) genes, complete cds; nonfunctional envelope glycoprotein (env) gene, complete sequence; and nonfunctional nef protein (nef) gene, partial sequence | blastn | 28 | 52.8 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus simimdef | ||
| 10016815 | 10016815 | PRJNA432257_S_NODE_29888_length_279_cov_118.413223_g29507_i0 | PRJNA432257 | 29888 | 279 | 118.413223 | 330.37289217 | root | 1 | Root_unresolved | Root_unresolved | 235 | 2.38e-57 | NTclustered | gi|331934|gb|J02255.1|MLMCG | 11786 | g29507 | i0 | 97.81 | 125.505376344086 | 137 | 2 | 49 | 1 | 38 | 174 | 2608 | 2743 | Moloney murine leukemia virus, complete genome | blastn | 35016 | 235 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Gammaretrovirus | Gammaretrovirus murleu | ||
| 31434595 | 31434595 | PRJNA432257_S_NODE_9636_length_414_cov_15.527851_g9288_i0 | PRJNA432257 | 9636 | 414 | 15.527851 | 64.28530314 | Moloney murine leukemia virus | 11801 | Viruses | Viruses | 248 | 2.3599999999999995e-73 | NR | NP_057933.2 | 11801 | g9288 | i0 | 96.1 | 1.84057971014493 | 127 | 5 | 92 | 0 | 33 | 413 | 1144 | 1270 | NP_057933.2 Pr180 [Moloney murine leukemia virus] | diamond | 762 | 248 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Gammaretrovirus | Gammaretrovirus murleu | ||
| 31577713 | 31577713 | PRJNA432257_S_NODE_3156_length_619_cov_19.537801_g2961_i0 | PRJNA432257 | 3156 | 619 | 19.537801 | 120.93898819 | Gammaretrovirus | 153135 | Viruses | Viruses | 389 | 1.81e-125 | NR | AAA79247.1 | 11786 | g2961 | i0 | 96.9 | 12.0872374798061 | 192 | 6 | 93.1 | 0 | 34 | 609 | 236 | 427 | AAA79247.1 putative reverse transcriptase [Murine leukemia virus] | diamond | 7482 | 389 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Gammaretrovirus | Gammaretrovirus murleu | ||
| 31830472 | 31830472 | PRJNA432257_S_NODE_8437_length_433_cov_153.055556_g8103_i0 | PRJNA432257 | 8437 | 433 | 153.055556 | 662.73055748 | Gammaretrovirus | 153135 | Viruses | Viruses | 271 | 4.7e-81 | NR | ARB03489.1 | 11786 | g8103 | i0 | 98.5 | 9.07621247113164 | 131 | 2 | 90.8 | 0 | 395 | 3 | 792 | 922 | ARB03489.1 putative gag-pro-pol polyprotein [Murine leukemia virus] | diamond | 3930 | 273 | 0.992673992673993 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Gammaretrovirus | Gammaretrovirus murleu |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;