RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

13 rows where bioproject = "PRJNA432257", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 13 ✖

tax_kingdom 1

  • Metazoa · 13 ✖

tax_clade 1

bioproject 1

  • PRJNA432257 · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6807378 6807378 PRJNA432257_S_NODE_43246_length_244_cov_1.835749_g42865_i0 PRJNA432257 43246 244 1.835749 4.47922756 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 52.8 0.022   NTclustered gi|2037983570|ref|XM_041604394.1| 7654 g42865 i0 100 0.229508196721311 28 0 11 0 156 183 1792 1765 PREDICTED: Lytechinus variegatus uncharacterized LOC121411593 (LOC121411593), transcript variant X1, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
18280735 18280735 PRJNA432257_S_NODE_119515_length_157_cov_1.808333_g119134_i0 PRJNA432257 119515 157 1.808333 2.83908281 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 143 7.47e-30   NTclustered gi|2038000323|ref|XM_041613285.1| 7654 g119134 i0 83.553 10.0891719745223 152 25 97 0 5 156 478 327 PREDICTED: Lytechinus variegatus calmodulin-beta-like (LOC121419026), mRNA blastn 1584 143 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
20831262 20831262 PRJNA432257_S_NODE_37457_length_257_cov_103.777273_g37076_i0 PRJNA432257 37457 257 103.777273 266.70759161 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 54.7 0.006   NTclustered gi|1752358866|ref|XM_030984384.1| 7668 g37076 i0 100 0.443579766536965 29 0 11 0 66 94 2459 2487 PREDICTED: Strongylocentrotus purpuratus probable low-specificity L-threonine aldolase 2 (LOC579654), transcript variant X1, mRNA blastn 114 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
25314849 25314849 PRJNA432257_S_NODE_36660_length_259_cov_73.720721_g36279_i0 PRJNA432257 36660 259 73.720721 190.93666739 Metazoa 33208 Echinodermata other_Eukaryota 54.7 0.007   NTclustered gi|2707423338|ref|XM_064103813.1| 7653 g36279 i0 100 0.474903474903475 29 0 11 0 80 108 8469 8441 PREDICTED: Lytechinus pictus receptor tyrosine-protein kinase erbB-4-like (LOC129255739), mRNA blastn 123 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
25314887 25314887 PRJNA432257_S_NODE_43140_length_244_cov_2.893720_g42759_i0 PRJNA432257 43140 244 2.89372 7.0606768 Echinodermata 7586 Echinodermata other_Eukaryota 100 1.02e-22   NR XP_041470552.1 7654 g42759 i0 64.8 5.22540983606557 71 25 87.3 0 216 4 3 73 XP_041470552.1 protein disulfide-isomerase A6 homolog [Lytechinus variegatus] diamond 1275 100 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
28260640 28260640 PRJNA432257_S_NODE_126746_length_151_cov_1.710526_g126365_i0 PRJNA432257 126746 151 1.710526 2.58289426 Metazoa 33208 Echinodermata other_Eukaryota 62.4 1.19e-9   NR XP_030855618.1 7668 g126365 i0 56.3 3.83443708609272 48 21 95.4 0 6 149 286 333 XP_030855618.1 exportin-1 [Strongylocentrotus purpuratus] diamond 579 62.4 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
28292252 28292252 PRJNA432257_S_NODE_122046_length_155_cov_1.610169_g121665_i0 PRJNA432257 122046 155 1.610169 2.49576195 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 79 3.8e-16   NR KAJ8026771.1 206669 g121665 i0 71.4 21.7741935483871 49 14 94.8 0 7 153 140 188 KAJ8026771.1 40S ribosomal protein S4 [Holothuria leucospilota] diamond 3375 79 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota
29033962 29033962 PRJNA432257_S_NODE_114228_length_162_cov_1.560000_g113847_i0 PRJNA432257 114228 162 1.56 2.5272 Anneissia japonica 1529436 Echinodermata other_Eukaryota 43.1 0.00952   NR XP_033098360.1 1529436 g113847 i0 40.4 0.87037037037037 47 26 83.3 1 25 159 79 125 XP_033098360.1 protein mono-ADP-ribosyltransferase PARP14-like [Anneissia japonica] diamond 141 43.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
29191731 29191731 PRJNA432257_S_NODE_96529_length_179_cov_2.105634_g96148_i0 PRJNA432257 96529 179 2.105634 3.76908486 Anneissia japonica 1529436 Echinodermata other_Eukaryota 71.6 3.96e-13   NR XP_033125693.1 1529436 g96148 i0 74.5 3.93854748603352 47 12 78.8 0 3 143 210 256 XP_033125693.1 40S ribosomal protein S4, X isoform-like [Anneissia japonica] diamond 705 71.6 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
30360646 30360646 PRJNA432257_S_NODE_82292_length_191_cov_1.448052_g81911_i0 PRJNA432257 82292 191 1.448052 2.76577932 Holothuria leucospilota 206669 Echinodermata other_Eukaryota 42.7 0.0186   NR KAJ8030887.1 206669 g81911 i0 54.5 3.1413612565445 33 15 51.8 0 44 142 187 219 KAJ8030887.1 Agrin [Holothuria leucospilota] diamond 600 42.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota
31149631 31149631 PRJNA432257_S_NODE_5235_length_514_cov_94.775681_g4968_i0 PRJNA432257 5235 514 94.775681 487.14700034 Anneissia japonica 1529436 Echinodermata other_Eukaryota 148 2.36e-42   NR XP_033105107.1 1529436 g4968 i0 55.2 4.68093385214008 134 58 77 1 443 48 1 134 XP_033105107.1 60S ribosomal protein L14-like [Anneissia japonica] diamond 2406 148 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
31767348 31767348 PRJNA432257_S_NODE_83437_length_190_cov_1.274510_g83056_i0 PRJNA432257 83437 190 1.27451 2.421569 root 1 Root_unresolved Root_unresolved 91.7 6.98e-20   NR KAJ8040006.1 206669 g83056 i0 62.9 2.96842105263158 62 23 97.9 0 190 5 16 77 KAJ8040006.1 Calreticulin [Holothuria leucospilota] diamond 564 91.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota
32352348 32352348 PRJNA432257_S_NODE_77079_length_196_cov_1.641509_g76698_i0 PRJNA432257 77079 196 1.641509 3.21735764 Holothuria leucospilota 206669 Echinodermata other_Eukaryota 65.5 1.94e-10   NR KAJ8036388.1 206669 g76698 i0 71.7 0.704081632653061 46 13 70.4 0 2 139 594 639 KAJ8036388.1 Selenoprotein O [Holothuria leucospilota] diamond 138 65.5 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;