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contig_metadata

7 rows where bioproject = "PRJNA432257", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 7 ✖

tax_clade 1

  • delta/epsilon subdivisions · 7 ✖

bioproject 1

  • PRJNA432257 · 7 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17007638 17007638 PRJNA432257_S_NODE_96214_length_179_cov_9.105634_g95833_i0 PRJNA432257 96214 179 9.105634 16.29908486 uncultured delta proteobacterium 34034 Bacteria Bacteria 63.9 7.01e-6   NTclustered gi|2874253888|emb|OY970063.1| 34034 g95833 i0 97.297 0.854748603351955 37 1 21 0 99 135 270820 270856 MAG: uncultured delta proteobacterium isolate MFD10007.bin.1.119 genome assembly, chromosome: 1 blastn 153 63.9 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
27138613 27138613 PRJNA432257_S_NODE_116322_length_160_cov_1.585366_g115941_i0 PRJNA432257 116322 160 1.585366 2.5365856 uncultured delta proteobacterium 34034 Bacteria Bacteria 53.9 1.31e-6   NR SBV96778.1 34034 g115941 i0 55.6 0.84375 45 20 84.4 0 143 9 3 47 SBV96778.1 2,3-diaminopropionate ammonia-lyase [uncultured delta proteobacterium] diamond 135 53.9 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
27250291 27250291 PRJNA432257_S_NODE_104163_length_172_cov_61.925926_g103782_i0 PRJNA432257 104163 172 61.925926 106.51259272 Pseudomonadati 3379134 Bacteria Bacteria 71.2 6.19e-13   NR OGP54010.1 1797829 g103782 i0 77.1 7.48255813953488 48 11 83.7 0 3 146 122 169 OGP54010.1 MAG: phosphate ABC transporter permease subunit PstC [Deltaproteobacteria bacterium RBG_13_52_11] diamond 1287 71.2 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_13_52_11
28686674 28686674 PRJNA432257_S_NODE_33467_length_268_cov_88.242424_g33086_i0 PRJNA432257 33467 268 88.242424 236.48969632 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-9 2013759 Bacteria Bacteria 62 5.66e-10   NR PKN05556.1 2013759 g33086 i0 72.2 0.402985074626866 36 10 40.3 0 29 136 49 84 PKN05556.1 MAG: hypothetical protein CVU74_01115 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-9] diamond 108 62 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-9
30565858 30565858 PRJNA432257_S_NODE_58773_length_217_cov_133.744444_g58392_i0 PRJNA432257 58773 217 133.744444 290.22544348 Pseudomonadota 1224 Bacteria Bacteria 65.9 1.82e-10   NR CAB1063803.1 698986 g58392 i0 52.5 1.61751152073733 59 28 81.6 0 18 194 460 518 CAB1063803.1 Asparagine synthetase [glutamine-hydrolyzing] (EC [Olavius sp. associated proteobacterium Delta 1] diamond 351 65.9 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Olavius sp. associated proteobacterium Delta 1
31687621 31687621 PRJNA432257_S_NODE_38397_length_255_cov_4.321101_g38016_i0 PRJNA432257 38397 255 4.321101 11.01880755 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-6 2013756 Bacteria Bacteria 127 1.8599999999999998e-32   NR PKN17657.1 2013756 g38016 i0 93.2 0.870588235294118 74 5 87.1 0 3 224 273 346 PKN17657.1 MAG: hypothetical protein CVU71_14580 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-6] diamond 222 127 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-6
32463607 32463607 PRJNA432257_S_NODE_34479_length_265_cov_216.258772_g34098_i0 PRJNA432257 34479 265 216.258772 573.0857458 Bacteria 2 Bacteria Bacteria 96.7 1.58e-21   NR OGP64845.1 1797831 g34098 i0 65.2 6.22641509433962 66 23 74.7 0 213 16 276 341 OGP64845.1 MAG: chemotaxis response regulator protein-glutamate methylesterase [Deltaproteobacteria bacterium RBG_13_53_10] diamond 1650 96.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_13_53_10

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;