RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA432257", tax_clade = "Sar" and tax_phylum = "Endomyxa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA432257 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26663989 26663989 PRJNA432257_S_NODE_30221_length_278_cov_96.000000_g29840_i0 PRJNA432257 30221 278 96 266.88 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 45.4 0.00127   NR CEP02593.1 37360 g29840 i0 63.9 0.863309352517986 36 13 38.8 0 243 136 67 102 CEP02593.1 hypothetical protein PBRA_002561 [Plasmodiophora brassicae] diamond 240 45.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27692767 27692767 PRJNA432257_S_NODE_31384_length_275_cov_1.638655_g31003_i0 PRJNA432257 31384 275 1.638655 4.50630125 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 43.9 0.0203   NR CEO97972.1 37360 g31003 i0 67.9 1.22181818181818 28 9 30.5 0 261 178 332 359 CEO97972.1 hypothetical protein PBRA_006086 [Plasmodiophora brassicae] diamond 336 44.3 0.99097065462754 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32035655 32035655 PRJNA432257_S_NODE_123278_length_154_cov_1.495726_g122897_i0 PRJNA432257 123278 154 1.4957260000000001 2.30341804 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 55.8 5.52e-8   NR CEO99081.1 37360 g122897 i0 63.9 0.701298701298701 36 13 70.1 0 129 22 107 142 CEO99081.1 hypothetical protein PBRA_007195 [Plasmodiophora brassicae] diamond 108 55.8 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32115543 32115543 PRJNA432257_S_NODE_3738_length_582_cov_73.363303_g3519_i0 PRJNA432257 3738 582 73.363303 426.97442346 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 64.3 8.35e-9   NR SPQ97707.1 37360 g3519 i0 44.2 0.876288659793814 77 43 39.7 0 257 487 134 210 SPQ97707.1 unnamed protein product [Plasmodiophora brassicae] diamond 510 64.3 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;