RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA432257", tax_clade = "Sar" and tax_phylum = "Cercozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA432257 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2981068 2981068 PRJNA432257_S_NODE_98483_length_177_cov_65.764286_g98102_i0 PRJNA432257 98483 177 65.764286 116.40278622 Rhogostoma bowseri 2691101 SAR_Eukaryotes SAR_Eukaryotes 263 6.349999999999999e-66   NTclustered gi|1787214117|gb|MN860288.1| 2691101 g98102 i0 100 80.2146892655367 142 0 80 0 1 142 234 93 Rhogostoma bowseri strain 3A small subunit ribosomal RNA gene, partial sequence blastn 14198 263 1 Eukaryota Sar   Cercozoa Thecofilosea Cryomonadida Rhogostomidae Rhogostoma Rhogostoma bowseri
4257034 4257034 PRJNA432257_S_NODE_70824_length_202_cov_112.557576_g70443_i0 PRJNA432257 70824 202 112.557576 227.36630352 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 135 1.7000000000000002e-27   NTclustered gi|238617602|gb|FJ973377.1| 188950 g70443 i0 81.818 47.7821782178218 165 27 81 3 40 202 1954 2117 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 9652 135 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
13183854 13183854 PRJNA432257_S_NODE_80771_length_192_cov_7.174194_g80390_i0 PRJNA432257 80771 192 7.174194 13.77445248 Thaumatomastix sp. CC002-Boundary Bay 741090 SAR_Eukaryotes SAR_Eukaryotes 158 3.41e-34   NTclustered gi|290760490|gb|GQ144693.1| 741090 g80390 i0 91.304 66.9427083333333 115 10 60 0 1 115 990 1104 Thaumatomastix sp. CC002-Boundary Bay large subunit ribosomal RNA gene, partial sequence blastn 12853 158 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Thaumatomastix Thaumatomastix sp. CC002-Boundary Bay
13183948 13183948 PRJNA432257_S_NODE_87491_length_186_cov_5.677852_g87110_i0 PRJNA432257 87491 186 5.677852 10.56080472 Rosculus sp. 2231160 SAR_Eukaryotes SAR_Eukaryotes 274 3.1199999999999996e-69   NTclustered gi|1402550476|gb|MH488762.1| 2231160 g87110 i0 98.71 6.79032258064516 155 0 82 1 1 153 554 400 Rosculus sp. isolate CCAC3 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 1263 274 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;