RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA432257", tax_clade = "PVC group" and tax_phylum = "Kiritimatiellota"

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tax_superkingdom 1

tax_phylum 1

  • Kiritimatiellota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA432257 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28086391 28086391 PRJNA432257_S_NODE_53145_length_226_cov_1.978836_g52764_i0 PRJNA432257 53145 226 1.978836 4.47216936 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 127 1.44e-35   NR MBP1590048.1 2212473 g52764 i0 77.3 0.995575221238938 75 17 99.6 0 225 1 50 124 MBP1590048.1 GDP-mannose 4,6-dehydratase [Kiritimatiellia bacterium] diamond 225 127 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
30771103 30771103 PRJNA432257_S_NODE_92114_length_182_cov_25.944828_g91733_i0 PRJNA432257 92114 182 25.944828 47.21958696 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 42 0.0206   NR MFA7174721.1 2212473 g91733 i0 48.4 0.510989010989011 31 16 51.1 0 153 61 123 153 MFA7174721.1 hypothetical protein [Kiritimatiellia bacterium] diamond 93 42 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
31181311 31181311 PRJNA432257_S_NODE_100795_length_175_cov_269.246377_g100414_i0 PRJNA432257 100795 175 269.246377 471.18115975 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 58.5 3.34e-8   NR HPB12145.1 2212473 g100414 i0 96.2 0.445714285714286 26 1 44.6 0 40 117 195 220 HPB12145.1 FxDxF family PEP-CTERM protein [Kiritimatiellia bacterium] diamond 78 58.5 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;