RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA432257", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA432257 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18281884 18281884 PRJNA432257_S_NODE_88275_length_185_cov_190.182432_g87894_i0 PRJNA432257 88275 185 190.182432 351.8374992 Pseudomonadati 3379134 Bacteria Bacteria 98.6 3.68e-22   NR WP_174238065.1 29549 g87894 i0 86.5 24.1135135135135 52 7 84.3 0 30 185 79 130 WP_174238065.1 threonine--tRNA ligase [Rhodothermus marinus] diamond 4461 98.6 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus
27991910 27991910 PRJNA432257_S_NODE_23905_length_303_cov_2.571429_g23524_i0 PRJNA432257 23905 303 2.571429 7.79142987 Rhodothermus bifroesti 2823335 Bacteria Bacteria 126 1.14e-33   NR WP_210373325.1 2823335 g23524 i0 100 0.653465346534653 66 0 65.3 0 106 303 175 240 WP_210373325.1 hypothetical protein [Rhodothermus bifroesti] diamond 198 126 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus bifroesti
29191712 29191712 PRJNA432257_S_NODE_5669_length_500_cov_27.710583_g5399_i0 PRJNA432257 5669 500 27.710583 138.552915 Rhodothermus bifroesti 2823335 Bacteria Bacteria 258 6.45e-85   NR WP_210373326.1 2823335 g5399 i0 99.2 0.756 126 1 75.6 0 55 432 1 126 WP_210373326.1 hypothetical protein [Rhodothermus bifroesti] diamond 378 258 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus bifroesti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;