RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA432257", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA432257 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2980919 2980919 PRJNA432257_S_NODE_85323_length_188_cov_2.304636_g84942_i0 PRJNA432257 85323 188 2.304636 4.33271568 Centropyxis laevigata 318528 Tubulinea other_Eukaryota 246 6.889999999999999e-61   NTclustered gi|61655689|gb|AY848965.1| 318528 g84942 i0 92.941 74.3085106382979 170 10 90 2 1 170 1294 1127 Centropyxis laevigata small subunit ribosomal RNA gene, partial sequence blastn 13970 246 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Centropyxidae Centropyxis Centropyxis laevigata
22105731 22105731 PRJNA432257_S_NODE_121758_length_155_cov_2.084746_g121377_i0 PRJNA432257 121758 155 2.084746 3.2313563 Nolandella sp. ATCC 50913 498005 Tubulinea other_Eukaryota 158 2.63e-34   NTclustered gi|167859741|gb|EU273451.1| 498005 g121377 i0 86 87.3483870967742 150 18 97 3 1 150 1290 1436 Nolandella sp. ATCC 50913 18S ribosomal RNA gene, partial sequence blastn 13539 158 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Nolandella Nolandella sp. ATCC 50913
30233772 30233772 PRJNA432257_S_NODE_45252_length_239_cov_1214.475248_g44871_i0 PRJNA432257 45252 239 1214.475248 2902.59584272 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 122 2.35e-33   NR AKT93932.1 5778 g44871 i0 92.2 1.60669456066946 64 5 80.3 0 8 199 8 71 AKT93932.1 ribosomal protein L11 [Vermamoeba vermiformis] diamond 384 122 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;