RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA431371" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA431371 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24654607 24654607 PRJNA431371_P_NODE_29060_length_247_cov_1.327586_g28987_i0 PRJNA431371 29060 247 1.327586 3.27913742 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 94.4 4.08e-22   NR XP_068354870.1 1144522 g28987 i0 53.2 1.93117408906883 77 36 93.5 0 232 2 28 104 XP_068354870.1 Ras-related protein RIC1 [Tritrichomonas foetus] diamond 477 94.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
29601716 29601716 PRJNA431371_P_NODE_34770_length_242_cov_0.911243_g34697_i0 PRJNA431371 34770 242 0.911243 2.20520806 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 55.8 9.08e-7   NR XP_001322651.1 412133 g34697 i0 59.5 0.520661157024793 42 17 52.1 0 242 117 2146 2187 XP_001322651.1 ataxia telangiectasia mutated (ATM) -related family [Trichomonas vaginalis G3] diamond 126 55.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
31814172 31814172 PRJNA431371_P_NODE_31517_length_245_cov_0.895349_g31444_i0 PRJNA431371 31517 245 0.895349 2.19360505 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 43.5 0.00503   NR XP_001314726.1 412133 g31444 i0 53.3 1.59183673469388 30 14 36.7 0 97 8 51 80 XP_001314726.1 positive regulation of ATP-dependent microtubule motor activity, plus-end-directed [Trichomonas vaginalis G3] diamond 390 43.5 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;