RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA431371" and tax_phylum = "Hemichordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Hemichordata · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA431371 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18939494 18939494 PRJNA431371_P_NODE_22515_length_267_cov_1.587629_g22442_i0 PRJNA431371 22515 267 1.587629 4.23896943 Saccoglossus kowalevskii 10224 Hemichordata other_Eukaryota 91.7 9.15e-20   NR XP_002737620.2 10224 g22442 i0 50.6 5.70786516853933 87 43 97.8 0 261 1 39 125 XP_002737620.2 PREDICTED: uncharacterized protein LOC100376680 [Saccoglossus kowalevskii] diamond 1524 91.7 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii
27549612 27549612 PRJNA431371_P_NODE_36424_length_241_cov_0.916667_g36351_i0 PRJNA431371 36424 241 0.916667 2.20916747 Saccoglossus kowalevskii 10224 Hemichordata other_Eukaryota 74.7 4.62e-15   NR XP_006821294.1 10224 g36351 i0 57.7 0.970954356846473 78 32 97.1 1 3 236 30 106 XP_006821294.1 PREDICTED: 60S ribosomal protein L35-like [Saccoglossus kowalevskii] diamond 234 74.7 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii
28734482 28734482 PRJNA431371_P_NODE_10227_length_390_cov_5.271293_g10154_i0 PRJNA431371 10227 390 5.271293 20.5580427 Metazoa 33208 Hemichordata other_Eukaryota 62 1.36e-8   NR XP_002742150.1 10224 g10154 i0 43.7 5.51538461538462 87 41 66.9 2 262 2 107 185 XP_002742150.1 PREDICTED: elongation factor 1-beta-like [Saccoglossus kowalevskii] diamond 2151 62.4 0.993589743589744 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii
28812346 28812346 PRJNA431371_P_NODE_17948_length_303_cov_1.004348_g17875_i0 PRJNA431371 17948 303 1.004348 3.04317444 Ptychodera flava 63121 Hemichordata other_Eukaryota 45.1 0.0117   NR XP_070535730.1 63121 g17875 i0 39 1.13861386138614 59 34 58.4 1 299 123 231 287 XP_070535730.1 macrophage mannose receptor 1-like [Ptychodera flava] diamond 345 45.1 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;