RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA431371", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 6 ✖

tax_kingdom 1

  • Pseudomonadati · 6 ✖

bioproject 1

  • PRJNA431371 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7466154 7466154 PRJNA431371_P_NODE_3986_length_582_cov_1.599214_g3913_i0 PRJNA431371 3986 582 1.599214 9.30742548 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 137 1.85e-34   NR MBL7715932.1 2053517 g3913 i0 48.7 4.72164948453608 158 79 81.4 2 107 580 18 173 MBL7715932.1 F0F1 ATP synthase subunit alpha [Bdellovibrionales bacterium] diamond 2748 137 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
10016103 10016103 PRJNA431371_P_NODE_20148_length_285_cov_1.268868_g20075_i0 PRJNA431371 20148 285 1.268868 3.6162738 Bdellovibrio 958 Bacteria Bacteria 281 3.08e-71   NTclustered gi|2895994964|gb|CP178619.1| 3394355 g20075 i0 86.245 336.154385964912 269 26 92 10 23 285 574950 574687 Bdellovibrio sp. HCB288 chromosome, complete genome blastn 95804 281 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB288
26871115 26871115 PRJNA431371_P_NODE_31281_length_245_cov_1.447674_g31208_i0 PRJNA431371 31281 245 1.447674 3.5468013 Bdellovibrio 958 Bacteria Bacteria 140 3.41e-38   NR MBC7465500.1 28201 g31208 i0 82.7 8.9265306122449 81 14 99.2 0 3 245 289 369 MBC7465500.1 cystathionine gamma-synthase [Bdellovibrio sp.] diamond 2187 140 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
31845681 31845681 PRJNA431371_P_NODE_1117_length_902_cov_1.869723_g1055_i0 PRJNA431371 1117 902 1.869723 16.86490146 Silvanigrellaceae bacterium 2654442 Bacteria Bacteria 83.2 1.69e-16   NR MBX9703359.1 2654442 g1055 i0 62.7 0.169623059866962 51 19 17 0 91 243 1 51 MBX9703359.1 hypothetical protein [Silvanigrellaceae bacterium] diamond 153 83.2 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae   Silvanigrellaceae bacterium
31845695 31845695 PRJNA431371_P_NODE_2837_length_658_cov_6.535043_g2764_i0 PRJNA431371 2837 658 6.535043 43.00058294 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 313 6.829999999999997e-106   NR MBX9767865.1 2053517 g2764 i0 89.4 0.775075987841945 170 18 77.5 0 147 656 1 170 MBX9767865.1 hypothetical protein [Bdellovibrionales bacterium] diamond 510 313 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32667859 32667859 PRJNA431371_P_NODE_17840_length_304_cov_1.000000_g17767_i0 PRJNA431371 17840 304 1 3.04 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 74.7 3.13e-14   NR HLD98962.1 3034175 g17767 i0 54.7 1.78618421052632 64 29 63.2 0 3 194 108 171 HLD98962.1 GNAT family N-acetyltransferase [Bdellovibrionota bacterium] diamond 543 74.7 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;