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contig_metadata

17 rows where bioproject = "PRJNA431371", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 17 ✖

tax_kingdom 1

  • Metazoa · 17 ✖

tax_clade 1

bioproject 1

  • PRJNA431371 · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11907138 11907138 PRJNA431371_P_NODE_32370_length_244_cov_1.801170_g32297_i0 PRJNA431371 32370 244 1.80117 4.3948548 Metazoa 33208 Nematoda Nematoda 128 4.979999999999998e-35   NR VDM49891.1 6265 g32297 i0 69.1 45.7991803278689 81 25 99.6 0 243 1 10 90 VDM49891.1 unnamed protein product [Toxocara canis] diamond 11175 129 0.992248062015504 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
15730803 15730803 PRJNA431371_P_NODE_2293_length_710_cov_1.692308_g2220_i0 PRJNA431371 2293 710 1.692308 12.0153868 Metazoa 33208 Nematoda Nematoda 254 4.9900000000000007e-79   NR CDW54356.1 36087 g2220 i0 54.8 31.4492957746479 217 98 91.7 0 710 60 131 347 CDW54356.1 eukaryotic peptide chain release factor subunit [Trichuris trichiura] diamond 22329 256 0.9921875 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
20829779 20829779 PRJNA431371_P_NODE_19197_length_292_cov_1.273973_g19124_i0 PRJNA431371 19197 292 1.273973 3.72000116 Rhabditida 6236 Nematoda Nematoda 137 1.79e-36   NR XP_064044047.1 51031 g19124 i0 68.8 7.89041095890411 96 30 98.6 0 3 290 156 251 XP_064044047.1 hypothetical protein RB195_020037 [Necator americanus] diamond 2304 137 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
20830154 20830154 PRJNA431371_P_NODE_4337_length_564_cov_1.437882_g4264_i0 PRJNA431371 4337 564 1.437882 8.10965448 Caenorhabditis briggsae 6238 Nematoda Nematoda 257 1.1e-63   NTclustered gi|2158424922|ref|XM_045237347.1| 6238 g4264 i0 77.556 2.89539007092199 450 85 78 13 1 442 1992 2433 Caenorhabditis briggsae Protein CBR-EFT-2 (Cbr-eft-2), partial mRNA blastn 1633 257 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
28134681 28134681 PRJNA431371_P_NODE_23325_length_261_cov_1.500000_g23252_i0 PRJNA431371 23325 261 1.5 3.915 Metazoa 33208 Nematoda Nematoda 134 2.2e-37   NR NP_001367640.1 6239 g23252 i0 64.4 15.9310344827586 87 31 100 0 261 1 79 165 NP_001367640.1 Phosphatidylethanolamine-binding protein homolog F40A3.3 [Caenorhabditis elegans] diamond 4158 135 0.992592592592593 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
28497061 28497061 PRJNA431371_P_NODE_9587_length_402_cov_1.811550_g9514_i0 PRJNA431371 9587 402 1.81155 7.282431 Strongyloides ratti 34506 Nematoda Nematoda 52.8 6.75e-5   NR XP_024502458.1 34506 g9514 i0 40.8 2.25373134328358 76 44 56 1 9 233 798 873 XP_024502458.1 Rab-GTPase-TBC domain and Pleckstrin homology domain and Pleckstrin homology-like domain-containing protein [Strongyloides ratti] diamond 906 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
29349513 29349513 PRJNA431371_P_NODE_25929_length_250_cov_0.870056_g25856_i0 PRJNA431371 25929 250 0.870056 2.17514 Pristionchus fissidentatus 1538716 Nematoda Nematoda 46.6 0.0018   NR GMT22004.1 1538716 g25856 i0 36.6 0.852 71 38 79.2 2 250 53 414 482 GMT22004.1 hypothetical protein PFISCL1PPCAC_13301 [Pristionchus fissidentatus] diamond 213 46.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
29633199 29633199 PRJNA431371_P_NODE_26810_length_249_cov_1.312500_g26737_i0 PRJNA431371 26810 249 1.3125 3.268125 Meloidogyne enterolobii 390850 Nematoda Nematoda 80.1 2.68e-15   NR CAD2199784.1 390850 g26737 i0 36.6 2.97590361445783 82 52 98.8 0 2 247 183 264 CAD2199784.1 unnamed protein product [Meloidogyne enterolobii] diamond 741 80.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
29854677 29854677 PRJNA431371_P_NODE_13271_length_347_cov_3.514599_g13198_i0 PRJNA431371 13271 347 3.514599 12.19565853 Trichinella murrelli 144512 Nematoda Nematoda 137 3.45e-38   NR KRX45829.1 144512 g13198 i0 60.9 10.4870317002882 110 43 95.1 0 1 330 104 213 KRX45829.1 GTP-binding nuclear protein Ran [Trichinella murrelli] diamond 3639 137 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella murrelli
30060473 30060473 PRJNA431371_P_NODE_14691_length_333_cov_1.184615_g14618_i0 PRJNA431371 14691 333 1.184615 3.94476795 Metazoa 33208 Nematoda Nematoda 49.3 4.87e-4   NR KAE9417589.1 6313 g14618 i0 61.5 1.61261261261261 39 11 31.5 1 229 333 173 211 KAE9417589.1 hypothetical protein Angca_003473 [Angiostrongylus cantonensis] diamond 537 49.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Angiostrongylus Angiostrongylus cantonensis
30107252 30107252 PRJNA431371_P_NODE_23332_length_261_cov_1.329787_g23259_i0 PRJNA431371 23332 261 1.329787 3.47074407 Heterodera trifolii 157864 Nematoda Nematoda 71.2 4.41e-12   NR KAL3117145.1 157864 g23259 i0 45.5 0.885057471264368 77 41 87.4 1 34 261 581 657 KAL3117145.1 hypothetical protein niasHT_007548 [Heterodera trifolii] diamond 231 71.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera trifolii
30265625 30265625 PRJNA431371_P_NODE_22332_length_269_cov_1.178571_g22259_i0 PRJNA431371 22332 269 1.178571 3.17035599 Strongyloides ratti 34506 Nematoda Nematoda 67 1.51e-10   NR XP_024501165.1 34506 g22259 i0 42.2 1.94052044609665 83 44 88.1 2 239 3 1822 1904 XP_024501165.1 E3 ubiquitin-protein ligase TRIP12 [Strongyloides ratti] diamond 522 67 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
30377013 30377013 PRJNA431371_P_NODE_23712_length_258_cov_1.589189_g23639_i0 PRJNA431371 23712 258 1.589189 4.10010762 Metazoa 33208 Nematoda Nematoda 87.8 4.78e-18   NR VDK59019.1 71465 g23639 i0 48.2 4.93023255813953 85 43 98.8 1 4 258 310 393 VDK59019.1 unnamed protein product [Cylicostephanus goldi] diamond 1272 88.6 0.99097065462754 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Cylicostephanus Cylicostephanus goldi
30408520 30408520 PRJNA431371_P_NODE_24173_length_254_cov_1.701657_g24100_i0 PRJNA431371 24173 254 1.701657 4.32220878 Metazoa 33208 Nematoda Nematoda 47 5.52e-4   NR XP_024510218.1 34506 g24100 i0 43.4 5.25590551181102 53 30 62.6 0 250 92 37 89 XP_024510218.1 Anoctamin-8 [Strongyloides ratti] diamond 1335 47.4 0.991561181434599 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
30882071 30882071 PRJNA431371_P_NODE_9594_length_402_cov_1.550152_g9521_i0 PRJNA431371 9594 402 1.550152 6.23161104 Metazoa 33208 Nematoda Nematoda 52.4 9.31e-5   NR MFH4977786.1 75299 g9521 i0 30.4 1.52985074626866 102 65 75.4 3 351 49 774 870 MFH4977786.1 hypothetical protein [Gnathostoma spinigerum] diamond 615 52.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum
31086845 31086845 PRJNA431371_P_NODE_18475_length_298_cov_1.137778_g18402_i0 PRJNA431371 18475 298 1.137778 3.39057844 Strongyloides ratti 34506 Nematoda Nematoda 46.2 0.0042   NR XP_024510745.1 34506 g18402 i0 37.9 3.58389261744966 66 35 66.4 1 203 6 346 405 XP_024510745.1 ATP-binding cassette sub-family G member 2 [Strongyloides ratti] diamond 1068 46.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
32793631 32793631 PRJNA431371_P_NODE_12060_length_363_cov_1.327586_g11987_i0 PRJNA431371 12060 363 1.327586 4.81913718 Caenorhabditis brenneri 135651 Nematoda Nematoda 94.7 6.66e-20   NR EGT53893.1 135651 g11987 i0 40 4.03305785123967 120 68 99.2 2 362 3 208 323 EGT53893.1 hypothetical protein CAEBREN_23563 [Caenorhabditis brenneri] diamond 1464 94.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis brenneri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;