RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA431371" and tax_kingdom = "Fusobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 7 ✖

bioproject 1

  • PRJNA431371 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2979062 2979062 PRJNA431371_P_NODE_32823_length_244_cov_0.900585_g32750_i0 PRJNA431371 32823 244 0.900585 2.1974274 Leptotrichia shahii 157691 Bacteria Bacteria 412 8.759999999999998e-111   NTclustered gi|1708568515|dbj|AP019827.1| 157691 g32750 i0 97.131 5.55327868852459 244 7 100 0 1 244 1283234 1282991 Leptotrichia shahii JCM16776 DNA, complete genome blastn 1355 412 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia shahii
4254862 4254862 PRJNA431371_P_NODE_11944_length_364_cov_2.109966_g11871_i0 PRJNA431371 11944 364 2.109966 7.68027624 Haliovirga abyssi 2996794 Bacteria Bacteria 52.8 0.035   NTclustered gi|2502752323|dbj|AP027059.1| 2996794 g11871 i0 100 0.0769230769230769 28 0 8 0 98 125 2226661 2226634 Fusobacteria bacterium IC12 DNA, complete genome blastn 28 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Haliovirgaceae Haliovirga Haliovirga abyssi
8740811 8740811 PRJNA431371_P_NODE_18387_length_299_cov_1.022124_g18314_i0 PRJNA431371 18387 299 1.022124 3.05615076 FCB group 1783270 Bacteria Bacteria 113 2.75e-28   NR WP_298067053.1 527638 g18314 i0 63.3 15.7224080267559 90 33 90.3 0 272 3 25 114 WP_298067053.1 arsenic resistance protein, partial [uncultured Cetobacterium sp.] diamond 4701 114 0.991228070175439 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
11907282 11907282 PRJNA431371_P_NODE_6230_length_486_cov_2.288136_g6157_i0 PRJNA431371 6230 486 2.288136 11.12034096 Fusobacterium polymorphum 76857 Bacteria Bacteria 56.5 0.004   NTclustered gi|2706067283|gb|CP077110.1| 76857 g6157 i0 100 0.0617283950617284 30 0 6 0 335 364 2236498 2236527 Fusobacterium polymorphum strain KCOM1278 chromosome, complete genome blastn 30 56.5 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
17665650 17665650 PRJNA431371_P_NODE_34414_length_243_cov_0.905882_g34341_i0 PRJNA431371 34414 243 0.905882 2.20129326 Leptotrichia 32067 Bacteria Bacteria 372 1.48e-98   NTclustered gi|2557559843|gb|CP130323.1| 3058373 g34341 i0 94.286 5.02880658436214 245 11 100 3 1 243 543906 544149 Leptotrichia sp. HMT-225 chromosome, complete genome blastn 1222 372 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. HMT-225
28528696 28528696 PRJNA431371_P_NODE_27747_length_249_cov_0.875000_g27674_i0 PRJNA431371 27747 249 0.875 2.17875 Caviibacter abscessus 1766719 Bacteria Bacteria 134 1.92e-35   NR WP_068268604.1 1766719 g27674 i0 84.1 0.987951807228916 82 13 98.8 0 2 247 297 378 WP_068268604.1 TrkH family potassium uptake protein [Caviibacter abscessus] diamond 246 134 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Caviibacter Caviibacter abscessus
32257494 32257494 PRJNA431371_P_NODE_4798_length_541_cov_1.946581_g4725_i0 PRJNA431371 4798 541 1.946581 10.53100321 Leptotrichia wadei 157687 Bacteria Bacteria 57.8 3.91e-6   NR WP_021746721.1 157687 g4725 i0 31.2 1.48059149722736 138 87 73.8 4 462 64 70 204 WP_021746721.1 tetratricopeptide repeat protein [Leptotrichia wadei] diamond 801 57.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;