RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA431371", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA431371 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24039820 24039820 PRJNA431371_P_NODE_29899_length_247_cov_0.885057_g29826_i0 PRJNA431371 29899 247 0.885057 2.18609079 Chlamydia 810 Bacteria Bacteria 52.8 0.022   NTclustered gi|2160489723|gb|CP042714.1| 813 g29826 i0 100 2.94736842105263 28 0 11 0 36 63 918118 918091 Chlamydia trachomatis strain TC0743::TncL2/tetR-2180 chromosome, complete genome blastn 728 52.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis
31498023 31498023 PRJNA431371_P_NODE_2116_length_732_cov_1.402124_g2043_i0 PRJNA431371 2116 732 1.402124 10.26354768 Chlamydiales bacterium 2047757 Bacteria Bacteria 233 1.89e-71   NR MBI2742725.1 2047757 g2043 i0 55.3 1.76229508196721 217 90 88.9 2 82 732 128 337 MBI2742725.1 tRNA-dihydrouridine synthase [Chlamydiales bacterium] diamond 1290 233 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;