RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA429937" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA429937 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1087370 1087370 PRJNA429937_P_NODE_150461_length_180_cov_3.066225_g127834_i0 PRJNA429937 150461 180 3.066225 5.519205 Vermamoeba 1260114 Tubulinea other_Eukaryota 222 1.0999999999999999e-53   NTclustered gi|300078496|gb|GU001158.1| 5778 g127834 i0 97.692 44.7222222222222 130 1 72 2 51 180 2647 2774 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 8050 222 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
6803765 6803765 PRJNA429937_P_NODE_153046_length_170_cov_5.035461_g130419_i0 PRJNA429937 153046 170 5.035461 8.5602837 Malpighamoeba mellificae 2901445 Tubulinea other_Eukaryota 100 5.01e-17   NTclustered gi|2161397193|gb|OL757386.1| 2901445 g130419 i0 100 31.2705882352941 54 0 32 0 1 54 1320 1373 Malpighamoeba mellificae isolate BK205-17_NGS small subunit ribosomal RNA gene, partial sequence blastn 5316 100 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Malpighamoeba Malpighamoeba mellificae
10629548 10629548 PRJNA429937_P_NODE_113729_length_264_cov_556.863830_g91106_i0 PRJNA429937 113729 264 556.86383 1470.1205112 Vermamoeba sp. 1972851 Tubulinea other_Eukaryota 381 2.709999999999999e-101   NTclustered gi|2651357782|gb|PP174298.1| 1972851 g91106 i0 93.385 33.375 257 17 97 0 8 264 3962 4218 Vermamoeba sp. isolate 22 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 8811 381 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba sp.
10630090 10630090 PRJNA429937_P_NODE_20769_length_807_cov_181.088689_g11328_i1 PRJNA429937 20769 807 181.088689 1461.38572023 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 628 2.9399999999999995e-175   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g11328 i1 97.067 41.8128872366791 375 8 59 3 7 380 4736 4364 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 33743 628 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
22102728 22102728 PRJNA429937_P_NODE_19178_length_839_cov_175.814815_g11328_i0 PRJNA429937 19178 839 175.814815 1475.08629785 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 1358 0   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g11328 i0 97.044 29.7449344457688 812 15 97 8 7 817 4736 3933 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 24956 1358 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;