RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA429937" and tax_phylum = "Thermoproteota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA429937 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4254121 4254121 PRJNA429937_P_NODE_65184_length_423_cov_3.271574_g26173_i1 PRJNA429937 65184 423 3.271574 13.83875802 Acidianus brierleyi 41673 Archaea Archaea 52.8 0.041   NTclustered gi|1820310180|gb|CP029289.2| 41673 g26173 i1 100 0.066193853427896 28 0 7 0 395 422 833643 833670 Acidianus brierleyi strain DSM 1651 chromosome, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Acidianus Acidianus brierleyi
21489459 21489459 PRJNA429937_P_NODE_5397_length_1489_cov_6.174658_g3183_i0 PRJNA429937 5397 1489 6.174658 91.94065762 Thermoproteus sp. 2268139 Archaea Archaea 181 2.55e-48   NR MFP3199777.1 2268139 g3183 i0 36.3 2.29885829415715 383 203 71.7 11 165 1232 1 369 MFP3199777.1 glycosyltransferase [Thermoproteus sp.] diamond 3423 181 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Thermoproteus Thermoproteus sp.
26949059 26949059 PRJNA429937_P_NODE_27182_length_702_cov_3.835067_g15705_i1 PRJNA429937 27182 702 3.835067 26.92217034 Thermoproteota archaeon 2056631 Archaea Archaea 148 1.78e-41   NR MDP9197224.1 2056631 g15705 i1 85.6 0.384615384615385 90 13 38.5 0 288 19 1 90 MDP9197224.1 DUF2203 domain-containing protein [Thermoproteota archaeon] diamond 270 148 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
27107136 27107136 PRJNA429937_P_NODE_41982_length_554_cov_7.554286_g26685_i0 PRJNA429937 41982 554 7.554286 41.85074444 Candidatus Methanomethylicaceae archaeon 2282146 Archaea Archaea 195 1.8899999999999998e-54   NR MEM3365499.1 2282146 g26685 i0 73.4 0.774368231046931 143 38 77.4 0 431 3 203 345 MEM3365499.1 hypothetical protein [Candidatus Methanomethyliaceae archaeon] diamond 429 195 1 Archaea   Thermoproteati Thermoproteota Methanosuratincolia Candidatus Methanomethylicales Candidatus Methanomethylicaceae   Candidatus Methanomethylicaceae archaeon
27707989 27707989 PRJNA429937_P_NODE_32524_length_636_cov_5.736409_g19966_i0 PRJNA429937 32524 636 5.736409 36.48356124 Thermoproteota archaeon 2056631 Archaea Archaea 363 1.16e-125   NR MEM3368514.1 2056631 g19966 i0 90.2 0.962264150943396 204 20 96.2 0 23 634 1 204 MEM3368514.1 hypothetical protein [Thermoproteota archaeon] diamond 612 363 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
29822749 29822749 PRJNA429937_P_NODE_28531_length_683_cov_3.877676_g15705_i2 PRJNA429937 28531 683 3.877676 26.48452708 Thermoproteota archaeon 2056631 Archaea Archaea 148 1.42e-41   NR MDP9197224.1 2056631 g15705 i2 85.6 0.395314787701318 90 13 39.5 0 396 665 1 90 MDP9197224.1 DUF2203 domain-containing protein [Thermoproteota archaeon] diamond 270 148 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
31845635 31845635 PRJNA429937_P_NODE_26197_length_716_cov_3.887918_g15705_i0 PRJNA429937 26197 716 3.887918 27.83749288 Thermoproteota archaeon 2056631 Archaea Archaea 148 2.02e-41   NR MDP9197224.1 2056631 g15705 i0 85.6 0.377094972067039 90 13 37.7 0 288 19 1 90 MDP9197224.1 DUF2203 domain-containing protein [Thermoproteota archaeon] diamond 270 148 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;