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contig_metadata

20 rows where bioproject = "PRJNA429937" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 20 ✖

tax_clade 1

bioproject 1

  • PRJNA429937 · 20 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1702328 1702328 PRJNA429937_P_NODE_81622_length_360_cov_7.607251_g59182_i0 PRJNA429937 81622 360 7.607251 27.3861036 Kentrophoros sp. 1 BS-2022 2930470 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.034   NTclustered gi|2261268989|emb|OX095830.1| 2930470 g59182 i0 100 0.0777777777777778 28 0 8 0 333 360 39 12 Kentrophoros sp. 1 BS-2022 partial 18S rRNA gene, isolate SAMEA13863266, clone N10:18S_rRNA::TRINITY_DN246_c0_g1_i2:46-1672(+) blastn 28 52.8 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Kentrophoridae Kentrophoros Kentrophoros sp. 1 BS-2022
2977800 2977800 PRJNA429937_P_NODE_61143_length_441_cov_22.621359_g41230_i0 PRJNA429937 61143 441 22.621359000000002 99.76019319 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 516 1.26e-141   NTclustered gi|2651357788|gb|PP174303.1| 41631 g41230 i0 87.416 95.3492063492064 445 46 100 8 1 441 3769 3331 Colpoda sp. isolate CIL1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 42049 516 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
4252814 4252814 PRJNA429937_P_NODE_127324_length_231_cov_2.202970_g104697_i0 PRJNA429937 127324 231 2.20297 5.0888607 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 93.5 1.22e-14   NTclustered gi|2651357791|gb|PP174306.1| 41631 g104697 i0 87.5 0.701298701298701 80 10 35 0 152 231 3790 3869 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 162 93.5 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
4915881 4915881 PRJNA429937_P_NODE_82564_length_357_cov_213.960366_g60091_i0 PRJNA429937 82564 357 213.960366 763.83850662 root 1 Root_unresolved Root_unresolved 494 4.67e-135   NTclustered gi|345541658|gb|JN547815.1| 5911 g60091 i0 93.433 82.375350140056 335 19 94 3 24 357 2193 2525 Tetrahymena thermophila strain ATCC 30382 18S ribosomal RNA gene, partial sequence; and internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence blastn 29408 494 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
6805450 6805450 PRJNA429937_P_NODE_96586_length_312_cov_4.402827_g73987_i0 PRJNA429937 96586 312 4.402827 13.73682024 Euplotes encysticus 440145 SAR_Eukaryotes SAR_Eukaryotes 555 1.8199999999999994e-153   NTclustered gi|759083524|gb|KM222141.1| 440145 g73987 i0 99.67 93.7532051282051 303 1 97 0 1 303 1554 1856 Euplotes encysticus voucher FXP2007122602 large subunit ribosomal RNA gene, partial sequence blastn 29251 555 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Euplotes Euplotes encysticus
8740224 8740224 PRJNA429937_P_NODE_150087_length_181_cov_13.578947_g127460_i0 PRJNA429937 150087 181 13.578947 24.57789407 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 272 1.08e-68   NTclustered gi|2651357791|gb|PP174306.1| 41631 g127460 i0 95.322 95.0662983425414 171 8 94 0 4 174 2067 1897 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17207 274 0.992700729927007 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
9354595 9354595 PRJNA429937_P_NODE_30208_length_662_cov_732.736177_g18357_i0 PRJNA429937 30208 662 732.736177 4850.71349174 Colpoda inflata 5980 SAR_Eukaryotes SAR_Eukaryotes 200 2.22e-46   NTclustered gi|759083543|gb|KM222160.1| 5980 g18357 i0 98.261 18.6555891238671 115 1 17 1 1 114 1018 1132 Colpoda inflata voucher SXK2011071402 large subunit ribosomal RNA gene, partial sequence blastn 12350 200 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda inflata
10629640 10629640 PRJNA429937_P_NODE_122309_length_242_cov_2861.915493_g99683_i0 PRJNA429937 122309 242 2861.915493 6925.83549306 Tetrahymena pyriformis 5908 SAR_Eukaryotes SAR_Eukaryotes 379 8.800000000000001e-101   NTclustered gi|1241841574|gb|KY273139.1| 5908 g99683 i0 96.137 53.6570247933884 233 7 96 2 10 242 233 3 Tetrahymena pyriformis isolate 1098-1 large subunit ribosomal RNA gene, partial sequence; macronuclear blastn 12985 379 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
11905696 11905696 PRJNA429937_P_NODE_52290_length_487_cov_3258.561135_g34430_i0 PRJNA429937 52290 487 3258.561135 15869.19272745 Euplotes aediculatus 5940 SAR_Eukaryotes SAR_Eukaryotes 507 8.43e-139   NTclustered gi|6980030|gb|AF223571.1|AF223571 5940 g34430 i0 86.279 34.6611909650924 481 48 98 13 1 477 2296 2762 Euplotes aediculatus internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 16880 507 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Euplotes Euplotes aediculatus
12566554 12566554 PRJNA429937_P_NODE_76050_length_379_cov_1104.205714_g53891_i0 PRJNA429937 76050 379 1104.205714 4184.93965606 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 577 4.8199999999999996e-160   NTclustered gi|220966760|gb|FJ545743.1| 94289 g53891 i0 96.045 92.8759894459103 354 14 93 0 23 376 4016 4369 Sterkiella histriomuscorum 17S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence; macronuclear blastn 35200 577 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum
14454634 14454634 PRJNA429937_P_NODE_118232_length_253_cov_2.035714_g95606_i0 PRJNA429937 118232 253 2.035714 5.15035642 Tetrahymena paravorax 5905 SAR_Eukaryotes SAR_Eukaryotes 200 7.749999999999998e-47   NTclustered gi|126142780|gb|EF070253.1| 5905 g95606 i0 100 71.6166007905138 108 0 43 0 146 253 149 256 Tetrahymena paravorax strain RP 18S small subunit ribosomal RNA gene, partial sequence blastn 18119 200 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena paravorax
15115190 15115190 PRJNA429937_P_NODE_151412_length_176_cov_6.782313_g128785_i0 PRJNA429937 151412 176 6.782313 11.93687088 Colpoda 5979 SAR_Eukaryotes SAR_Eukaryotes 265 1.7499999999999998e-66   NTclustered gi|759083543|gb|KM222160.1| 5980 g128785 i0 94.318 97.2443181818182 176 5 100 4 1 176 1018 848 Colpoda inflata voucher SXK2011071402 large subunit ribosomal RNA gene, partial sequence blastn 17115 265 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda inflata
15115588 15115588 PRJNA429937_P_NODE_82152_length_359_cov_2.633333_g59693_i0 PRJNA429937 82152 359 2.633333 9.45366547 Tintinnida 200604 SAR_Eukaryotes SAR_Eukaryotes 86.1 3.35e-12   NTclustered gi|759083534|gb|KM222151.1| 1607860 g59693 i0 89.552 16.3788300835655 67 7 19 0 1 67 1518 1584 Favella cf. campanula voucher JY08122201 large subunit ribosomal RNA gene, partial sequence blastn 5880 86.1 1 Eukaryota Sar   Ciliophora Spirotrichea Tintinnida Xystonellidae Favella Favella cf. campanula
17664865 17664865 PRJNA429937_P_NODE_122614_length_242_cov_1.929577_g99988_i0 PRJNA429937 122614 242 1.929577 4.66957634 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 167 7.46e-37   NTclustered gi|1802599793|gb|MT001202.1| 41631 g99988 i0 96.97 49.9917355371901 99 3 73 0 1 99 1215 1313 Colpoda sp. strain HFCC1281 small subunit ribosomal RNA gene, partial sequence blastn 12098 167 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
18278509 18278509 PRJNA429937_P_NODE_50255_length_499_cov_11.355319_g32888_i0 PRJNA429937 50255 499 11.355319 56.66304181 Tetrahymena nigricans 2704176 SAR_Eukaryotes SAR_Eukaryotes 431 5.359999999999998e-116   NTclustered gi|2082965251|gb|MZ827091.1| 2704176 g32888 i0 93.515 65.128256513026 293 13 86 5 185 476 789 502 Tetrahymena nigricans isolate VB57 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 32499 431 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena nigricans
20214031 20214031 PRJNA429937_P_NODE_94216_length_319_cov_18.368966_g71626_i0 PRJNA429937 94216 319 18.368966 58.59700154 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 525 1.4699999999999994e-144   NTclustered gi|1837628855|gb|MN158348.1| 5909 g71626 i0 98.976 90.9341692789969 293 3 92 0 4 296 2958 2666 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 29008 525 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata
21489056 21489056 PRJNA429937_P_NODE_108897_length_277_cov_3.149194_g86276_i0 PRJNA429937 108897 277 3.149194 8.72326738 Tintinnida 200604 SAR_Eukaryotes SAR_Eukaryotes 86.1 2.51e-12   NTclustered gi|759083534|gb|KM222151.1| 1607860 g86276 i0 89.552 21.2274368231047 67 7 24 0 1 67 1518 1584 Favella cf. campanula voucher JY08122201 large subunit ribosomal RNA gene, partial sequence blastn 5880 86.1 1 Eukaryota Sar   Ciliophora Spirotrichea Tintinnida Xystonellidae Favella Favella cf. campanula
24653340 24653340 PRJNA429937_P_NODE_59300_length_450_cov_7.370546_g39786_i0 PRJNA429937 59300 450 7.370546 33.167457 Halteria grandinella 5974 SAR_Eukaryotes SAR_Eukaryotes 63.2 2.67e-8   NR TNV87182.1 5974 g39786 i0 43.7 0.686666666666667 103 38 55.3 2 102 350 855 957 TNV87182.1 hypothetical protein FGO68_gene9481 [Halteria grandinella] diamond 309 63.2 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Halteriidae Halteria Halteria grandinella
24653539 24653539 PRJNA429937_P_NODE_69880_length_403_cov_8.304813_g48365_i0 PRJNA429937 69880 403 8.304813 33.46839639 Trachelocercidae sp. 3 BS-2022 2930473 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.039   NTclustered gi|2261268975|emb|OX095823.1| 2930473 g48365 i0 100 0.0694789081885856 28 0 7 0 1 28 11 38 Trachelocercidae sp. 3 BS-2022 partial 18S rRNA gene, isolate SAMEA13863269, clone N34:18S_rRNA::TRINITY_DN3988_c0_g1_i52:177-1769(-) blastn 28 52.8 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Trachelocercidae   Trachelocercidae sp. 3 BS-2022
30739142 30739142 PRJNA429937_P_NODE_140774_length_204_cov_2.262857_g118147_i0 PRJNA429937 140774 204 2.262857 4.61622828 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 87.4 4.05e-18   NR XP_001030873.3 312017 g118147 i0 85.4 0.705882352941177 48 7 70.6 0 36 179 1023 1070 XP_001030873.3 hypothetical protein TTHERM_01002750 [Tetrahymena thermophila SB210] diamond 144 87.4 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;