RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA429937" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA429937 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11906238 11906238 PRJNA429937_P_NODE_8250_length_1239_cov_15.184298_g4869_i0 PRJNA429937 8250 1239 15.184298 188.13345222 Chlorobaculum tepidum 1097 Bacteria Bacteria 756 0   NTclustered gi|21672293|gb|AE006470.1| 194439 g4869 i0 81.69 50.9967715899919 923 156 74 9 315 1231 1775151 1776066 Chlorobium tepidum TLS, complete genome blastn 63185 756 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum tepidum
19553521 19553521 PRJNA429937_P_NODE_9216_length_1183_cov_15.778163_g4869_i1 PRJNA429937 9216 1183 15.778163 186.65566829 Chlorobaculum tepidum 1097 Bacteria Bacteria 756 0   NTclustered gi|21672293|gb|AE006470.1| 194439 g4869 i1 81.69 53.4108199492815 923 156 78 9 259 1175 1775151 1776066 Chlorobium tepidum TLS, complete genome blastn 63185 756 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum tepidum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;