RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA429937", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA429937 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1087763 1087763 PRJNA429937_P_NODE_79901_length_366_cov_3.804154_g57518_i0 PRJNA429937 79901 366 3.804154 13.92320364 Gammaretrovirus 153135 Viruses Viruses 610 4.569999999999999e-170   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g57518 i0 98.551 92.7513661202186 345 5 94 0 1 345 3907 4251 Moloney murine leukemia virus, complete genome blastn 33947 610 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
22764734 22764734 PRJNA429937_P_NODE_86458_length_345_cov_2.525316_g63910_i0 PRJNA429937 86458 345 2.525316 8.7123402 root 1 Root_unresolved Root_unresolved 300 1.06e-76   NTclustered gi|2787680131|gb|PQ144827.1| 11676 g63910 i0 91.121 102.049275362319 214 10 100 1 1 205 1481 1694 HIV-1 isolate Hu_NL_LA_M3171 from USA pol protein (pol) gene, partial cds blastn 35207 300 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
24039540 24039540 PRJNA429937_P_NODE_79899_length_366_cov_3.937685_g57516_i0 PRJNA429937 79899 366 3.937685 14.4119271 Gammaretrovirus 153135 Viruses Viruses 610 4.569999999999999e-170   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g57516 i0 98.551 92.7513661202186 345 5 94 0 22 366 4251 3907 Moloney murine leukemia virus, complete genome blastn 33947 610 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;