RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA429937", tax_kingdom = "Metazoa" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA429937 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10015903 10015903 PRJNA429937_P_NODE_85588_length_347_cov_8928.490566_g63058_i0 PRJNA429937 85588 347 8928.490566 30981.86226402 Macrostomum 39217 Platyhelminthes Platyhelminthes 479 1.2699999999999996e-130   NTclustered gi|926460157|gb|KR132223.1| 282301 g63058 i0 92.353 65.2478386167147 340 20 97 4 10 346 5549 5213 Macrostomum lignano clone c100550_g1_i1 mRNA sequence blastn 22641 479 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
30186908 30186908 PRJNA429937_P_NODE_101932_length_296_cov_6.614232_g79318_i0 PRJNA429937 101932 296 6.614232 19.57812672 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 48.1 4.1e-4   NR CAH8482491.1 57078 g79318 i0 78.6 1.42905405405405 28 6 28.4 0 48 131 82 109 CAH8482491.1 unnamed protein product [Dicrocoelium dendriticum] diamond 423 48.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
32178866 32178866 PRJNA429937_P_NODE_101778_length_297_cov_2.582090_g79164_i0 PRJNA429937 101778 297 2.58209 7.6688073 root 1 Root_unresolved Root_unresolved 45.4 0.00798   NR KAA3680735.1 34504 g79164 i0 34.6 1.90909090909091 81 49 77.8 2 254 24 255 335 KAA3680735.1 ATP-dependent DNA helicase Q4 [Paragonimus westermani] diamond 567 45.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Troglotrematidae Paragonimus Paragonimus westermani

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;