RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA429937", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 8 ✖

tax_clade 1

  • delta/epsilon subdivisions · 8 ✖

bioproject 1

  • PRJNA429937 · 8 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7465796 7465796 PRJNA429937_P_NODE_77766_length_373_cov_220.651163_g55507_i0 PRJNA429937 77766 373 220.651163 823.02883799 Bacillati 1783272 Bacteria Bacteria 505 2.2699999999999991e-138   NTclustered gi|823651831|gb|KP400455.1| 34034 g55507 i0 91.553 98.9463806970509 367 30 98 1 1 366 208 574 Uncultured delta proteobacterium clone SS42 16S ribosomal RNA gene, partial sequence blastn 36907 510 0.990196078431373 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
12566603 12566603 PRJNA429937_P_NODE_86170_length_346_cov_2.088328_g63625_i0 PRJNA429937 86170 346 2.088328 7.22561488 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-1 2013736 Bacteria Bacteria 81.3 1.67e-15   NR PKN80627.1 2013736 g63625 i0 62.5 0.624277456647399 72 4 42.5 1 200 346 1 72 PKN80627.1 MAG: GDP-mannose 4,6-dehydratase [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-1] diamond 216 81.3 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-1
22764725 22764725 PRJNA429937_P_NODE_85738_length_347_cov_3.487421_g63202_i0 PRJNA429937 85738 347 3.487421 12.10135087 root 1 Root_unresolved Root_unresolved 435 2.7900000000000003e-117   NTclustered gi|1139283245|emb|LT697265.1| 34034 g63202 i0 98.78 79.0201729106628 246 0 70 2 105 347 746 501 uncultured delta proteobacterium partial 16S rRNA gene, isolate 10T_22683 blastn 27420 435 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
27138543 27138543 PRJNA429937_P_NODE_59482_length_450_cov_1.577197_g39935_i0 PRJNA429937 59482 450 1.577197 7.0973865 Deltaproteobacteria bacterium RIFCSPLOWO2_12_55_13 1797885 Bacteria Bacteria 185 4.48e-51   NR OGQ72666.1 1797885 g39935 i0 85 0.753333333333333 113 10 75.3 1 450 112 197 302 OGQ72666.1 MAG: hypothetical protein A2W73_07885, partial [Deltaproteobacteria bacterium RIFCSPLOWO2_12_55_13] diamond 339 185 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPLOWO2_12_55_13
30549567 30549567 PRJNA429937_P_NODE_45953_length_526_cov_11.446680_g29636_i0 PRJNA429937 45953 526 11.44668 60.2095368 Deltaproteobacteria bacterium ADurb.Bin135 1852867 Bacteria Bacteria 52.8 1.53e-4   NR OQB71626.1 1852867 g29636 i0 44.6 0.319391634980989 56 31 31.9 0 355 188 25 80 OQB71626.1 MAG: Chromosome partitioning protein ParA [Deltaproteobacteria bacterium ADurb.Bin135] diamond 168 52.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium ADurb.Bin135
30850478 30850478 PRJNA429937_P_NODE_27474_length_698_cov_4.496263_g16538_i0 PRJNA429937 27474 698 4.496263 31.38391574 Myxococcota 2818505 Bacteria Bacteria 130 9.14e-34   NR PKN16992.1 2013756 g16538 i0 45.3 1.19914040114613 139 76 59.7 0 698 282 58 196 PKN16992.1 MAG: hypothetical protein CVU71_18110 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-6] diamond 837 130 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-6
30992119 30992119 PRJNA429937_P_NODE_51354_length_493_cov_2.724138_g33711_i0 PRJNA429937 51354 493 2.724138 13.43000034 Deltaproteobacteria bacterium RIFCSPLOWO2_12_55_13 1797885 Bacteria Bacteria 165 7.05e-44   NR OGQ72666.1 1797885 g33711 i0 80 0.730223123732252 120 16 68.2 1 1 336 380 499 OGQ72666.1 MAG: hypothetical protein A2W73_07885, partial [Deltaproteobacteria bacterium RIFCSPLOWO2_12_55_13] diamond 360 165 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPLOWO2_12_55_13
31434493 31434493 PRJNA429937_P_NODE_44856_length_534_cov_2.954455_g28812_i0 PRJNA429937 44856 534 2.954455 15.7767897 Deltaproteobacteria bacterium RIFCSPLOWO2_12_55_13 1797885 Bacteria Bacteria 282 1.96e-86   NR OGQ72666.1 1797885 g28812 i0 83.9 1.04494382022472 186 22 100 1 534 1 380 565 OGQ72666.1 MAG: hypothetical protein A2W73_07885, partial [Deltaproteobacteria bacterium RIFCSPLOWO2_12_55_13] diamond 558 282 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPLOWO2_12_55_13

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;