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contig_metadata

6 rows where bioproject = "PRJNA429937", tax_clade = "Sar" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA429937 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2976595 2976595 PRJNA429937_P_NODE_139323_length_206_cov_12.768362_g116696_i0 PRJNA429937 139323 206 12.768362 26.30282572 Cercomonas sp. 1979794 SAR_Eukaryotes SAR_Eukaryotes 303 4.5e-78   NTclustered gi|2651357801|gb|PP174314.1| 1979794 g116696 i0 93.237 100.320388349515 207 12 100 2 1 206 3927 3722 Cercomonas sp. isolate P5 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 20666 303 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas sp.
3638852 3638852 PRJNA429937_P_NODE_86843_length_343_cov_481.656051_g64289_i0 PRJNA429937 86843 343 481.656051 1652.08025493 Bodomorpha 188949 SAR_Eukaryotes SAR_Eukaryotes 411 4.649999999999999e-110   NTclustered gi|238617602|gb|FJ973377.1| 188950 g64289 i0 94.074 78.9795918367347 270 16 79 0 21 290 1391 1122 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 27090 411 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
7465237 7465237 PRJNA429937_P_NODE_100146_length_302_cov_1.930403_g77536_i0 PRJNA429937 100146 302 1.930403 5.82981706 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 63.9 1.3e-5   NTclustered gi|113926796|emb|AM114804.1| 175275 g77536 i0 100 0.337748344370861 34 0 11 0 214 247 2092 2059 Uncultured cercozoan partial 18S rRNA gene, clone WIM44 blastn 102 63.9 1 Eukaryota Sar   Cercozoa         uncultured Cercozoa
17003284 17003284 PRJNA429937_P_NODE_149974_length_182_cov_2.679739_g127347_i0 PRJNA429937 149974 182 2.679739 4.87712498 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 259 8.5e-65   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g127347 i0 92.857 100.675824175824 182 7 100 3 1 182 3836 3661 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 18323 259 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
20829358 20829358 PRJNA429937_P_NODE_96497_length_312_cov_97.491166_g73898_i0 PRJNA429937 96497 312 97.491166 304.17243792 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 329 1.2e-85   NTclustered gi|238617605|gb|FJ973380.1| 45107 g73898 i0 92.609 72.4519230769231 230 15 73 2 23 251 1356 1584 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 22605 329 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
24653981 24653981 PRJNA429937_P_NODE_96800_length_311_cov_174.301418_g74201_i0 PRJNA429937 96800 311 174.301418 542.07740998 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 326 1.55e-84   NTclustered gi|238617605|gb|FJ973380.1| 45107 g74201 i0 85.759 89.3922829581994 316 35 100 10 1 311 1325 1635 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 27801 326 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;