RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJNA429937", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA429937 · 8 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
425683 425683 PRJNA429937_P_NODE_115061_length_261_cov_2.629310_g92435_i0 PRJNA429937 115061 261 2.62931 6.8624991 Neogregarinorida sp. OPPPC1 1233982 SAR_Eukaryotes SAR_Eukaryotes 132 2.97e-26   NTclustered gi|406719385|dbj|AB748927.1| 1233982 g92435 i0 82.166 46.8659003831418 157 24 59 4 42 195 3415 3570 Neogregarinorida sp. OPPPC1 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA blastn 12232 132 1 Eukaryota Sar   Apicomplexa Conoidasida Neogregarinorida     Neogregarinorida sp. OPPPC1
1701150 1701150 PRJNA429937_P_NODE_24242_length_746_cov_2.203626_g14480_i0 PRJNA429937 24242 746 2.203626 16.43904996 Plasmodium reichenowi 5854 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.021   NTclustered gi|1145260105|ref|XM_012908001.2| 5854 g14480 i0 100 0.0388739946380697 29 0 4 0 293 321 1397 1425 Plasmodium reichenowi hypothetical protein partial mRNA blastn 29 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium reichenowi
2977514 2977514 PRJNA429937_P_NODE_47783_length_514_cov_7.204124_g31031_i0 PRJNA429937 47783 514 7.204124 37.02919736 Eimeria necatrix 51315 SAR_Eukaryotes SAR_Eukaryotes 885 0   NTclustered gi|921123462|ref|XM_013580892.1| 51315 g31031 i0 97.674 149.101167315175 516 10 100 1 1 514 27 542 Eimeria necatrix hypothetical protein partial mRNA blastn 76638 885 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria necatrix
6804438 6804438 PRJNA429937_P_NODE_41986_length_554_cov_6.624762_g26687_i0 PRJNA429937 41986 554 6.624762 36.70118148 Eimeria necatrix 51315 SAR_Eukaryotes SAR_Eukaryotes 649 0   NTclustered gi|921123462|ref|XM_013580892.1| 51315 g26687 i0 98.634 121.78880866426 366 5 88 0 1 366 27 392 Eimeria necatrix hypothetical protein partial mRNA blastn 67471 649 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria necatrix
19551658 19551658 PRJNA429937_P_NODE_122876_length_241_cov_2.773585_g100250_i0 PRJNA429937 122876 241 2.773585 6.68433985 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 322 1.5e-83   NTclustered gi|820695469|tpe|LN714488.1| 572307 g100250 i0 90.909 17.6224066390042 242 19 99 3 1 240 97030 97270 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 4247 322 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
19552870 19552870 PRJNA429937_P_NODE_54296_length_477_cov_1.763393_g35937_i0 PRJNA429937 54296 477 1.763393 8.41138461 Neogregarinorida sp. OPPPC1 1233982 SAR_Eukaryotes SAR_Eukaryotes 137 1.25e-27   NTclustered gi|406719385|dbj|AB748927.1| 1233982 g35937 i0 89.091 24.083857442348 110 12 23 0 80 189 3461 3570 Neogregarinorida sp. OPPPC1 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA blastn 11488 137 1 Eukaryota Sar   Apicomplexa Conoidasida Neogregarinorida     Neogregarinorida sp. OPPPC1
22102945 22102945 PRJNA429937_P_NODE_27278_length_701_cov_2.236607_g16410_i0 PRJNA429937 27278 701 2.236607 15.67861507 Plasmodium reichenowi 5854 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.019   NTclustered gi|1145260105|ref|XM_012908001.2| 5854 g16410 i0 100 0.0413694721825963 29 0 4 0 293 321 1397 1425 Plasmodium reichenowi hypothetical protein partial mRNA blastn 29 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium reichenowi
24653719 24653719 PRJNA429937_P_NODE_79500_length_367_cov_1320.094675_g57136_i0 PRJNA429937 79500 367 1320.094675 4844.74745725 Eimeria papillata 162632 SAR_Eukaryotes SAR_Eukaryotes 357 6.6e-94   NTclustered gi|324022089|gb|GU593706.1| 162632 g57136 i0 86.095 92.0463215258856 338 39 91 6 1 334 1994 1661 Eimeria papillata strain Miska1 28S ribosomal RNA gene, partial sequence blastn 33781 357 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria papillata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;