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contig_metadata

13 rows where bioproject = "PRJNA429937", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 13 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 13 ✖

bioproject 1

  • PRJNA429937 · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1087647 1087647 PRJNA429937_P_NODE_58961_length_452_cov_3.673759_g39526_i0 PRJNA429937 58961 452 3.673759 16.60539068 Metazoa 33208 Nematoda Nematoda 654 0   NTclustered gi|158821895|gb|EU195959.1| 479134 g39526 i0 100 34.0420353982301 354 0 98 0 1 354 1555 1908 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 15387 654 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
3638256 3638256 PRJNA429937_P_NODE_103703_length_291_cov_5.679389_g81086_i0 PRJNA429937 103703 291 5.679389 16.52702199 Metazoa 33208 Nematoda Nematoda 67.6 9.63e-7   NTclustered gi|157431636|gb|AY602177.2| 35559 g81086 i0 100 12.3711340206186 36 0 12 0 77 112 1823 1858 Rhabditella axei strain DF5006 28S large subunit ribosomal RNA gene, partial sequence blastn 3600 67.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditella Rhabditella axei
4252806 4252806 PRJNA429937_P_NODE_126764_length_232_cov_2.793103_g104137_i0 PRJNA429937 126764 232 2.793103 6.47999896 Rhabditis sp. DF5059 479136 Nematoda Nematoda 313 8.62e-81   NTclustered gi|158821900|gb|EU195964.1| 479136 g104137 i0 90.4 11.7413793103448 250 6 100 5 1 232 1897 2146 Rhabditis sp. DF5059 28S ribosomal RNA gene, partial sequence blastn 2724 313 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditis Rhabditis sp. DF5059
6190591 6190591 PRJNA429937_P_NODE_32665_length_635_cov_3.932343_g20058_i0 PRJNA429937 32665 635 3.932343 24.97037805 Metazoa 33208 Nematoda Nematoda 67.6 2.25e-6   NTclustered gi|157431636|gb|AY602177.2| 35559 g20058 i0 100 5.66929133858268 36 0 6 0 286 321 1823 1858 Rhabditella axei strain DF5006 28S large subunit ribosomal RNA gene, partial sequence blastn 3600 67.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditella Rhabditella axei
11905227 11905227 PRJNA429937_P_NODE_31470_length_648_cov_4.071082_g19223_i0 PRJNA429937 31470 648 4.071082 26.38061136 Distolabrellus veechi 96664 Nematoda Nematoda 329 2.66e-85   NTclustered gi|157787504|gb|EF990725.1| 96664 g19223 i0 85.207 50.4583333333333 338 30 52 11 237 572 2573 2892 Distolabrellus veechi strain SB202 28S large subunit ribosomal RNA gene, partial sequence blastn 32697 329 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Distolabrellus Distolabrellus veechi
15730013 15730013 PRJNA429937_P_NODE_74313_length_386_cov_3.112045_g52301_i0 PRJNA429937 74313 386 3.112045 12.0124937 Diploscapter sp. JU359 479134 Nematoda Nematoda 464 3.9899999999999997e-126   NTclustered gi|158821895|gb|EU195959.1| 479134 g52301 i0 100 28.8678756476684 251 0 88 0 1 251 1805 1555 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 11143 464 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
15730303 15730303 PRJNA429937_P_NODE_93673_length_321_cov_3.712329_g71083_i0 PRJNA429937 93673 321 3.712329 11.91657609 Diploscapter sp. JU359 479134 Nematoda Nematoda 514 3.1999999999999996e-141   NTclustered gi|158821895|gb|EU195959.1| 479134 g71083 i0 95.95 40.3676012461059 321 2 100 1 1 321 1805 1496 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 12958 514 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
22102135 22102135 PRJNA429937_P_NODE_107378_length_281_cov_4.273810_g84758_i0 PRJNA429937 107378 281 4.27381 12.0094061 Diploscapter sp. JU359 479134 Nematoda Nematoda 520 5.909999999999999e-143   NTclustered gi|158821895|gb|EU195959.1| 479134 g84758 i0 100 38.5266903914591 281 0 100 0 1 281 1525 1805 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 10826 520 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
27233777 27233777 PRJNA429937_P_NODE_39803_length_571_cov_6.658672_g11761_i1 PRJNA429937 39803 571 6.658672 38.02101712 Wuchereria bancrofti 6293 Nematoda Nematoda 59.7 1.01e-7   NR EJW70189.1 6293 g11761 i1 47.1 0.367775831873905 70 36 36.3 1 363 569 1 70 EJW70189.1 hypothetical protein WUBG_18903 [Wuchereria bancrofti] diamond 210 59.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
27629502 27629502 PRJNA429937_P_NODE_65464_length_422_cov_2.152672_g44682_i0 PRJNA429937 65464 422 2.152672 9.08427584 Opisthokonta 33154 Nematoda Nematoda 45.4 0.0286   NR KHJ47703.1 68888 g44682 i0 64 2.239336492891 25 9 17.8 0 73 147 246 270 KHJ47703.1 zinc finger, C3HC4 type, partial [Trichuris suis] diamond 945 45.8 0.991266375545852 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
28717994 28717994 PRJNA429937_P_NODE_49647_length_503_cov_3.364979_g32426_i0 PRJNA429937 49647 503 3.364979 16.92584437 Oesophagostomum dentatum 61180 Nematoda Nematoda 53.9 5.94e-5   NR KHJ78363.1 61180 g32426 i0 45.5 1.31809145129225 55 30 32.8 0 367 203 312 366 KHJ78363.1 reverse transcriptase, partial [Oesophagostomum dentatum] diamond 663 53.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Oesophagostomum Oesophagostomum dentatum
29917901 29917901 PRJNA429937_P_NODE_19911_length_824_cov_5.413836_g11761_i0 PRJNA429937 19911 824 5.413836 44.61000864 Wuchereria bancrofti 6293 Nematoda Nematoda 112 7.18e-27   NR EJW70189.1 6293 g11761 i0 48.2 0.49878640776699 137 67 49.2 4 478 74 1 135 EJW70189.1 hypothetical protein WUBG_18903 [Wuchereria bancrofti] diamond 411 112 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
32098828 32098828 PRJNA429937_P_NODE_52518_length_486_cov_5.070022_g11761_i2 PRJNA429937 52518 486 5.070022 24.64030692 Wuchereria bancrofti 6293 Nematoda Nematoda 80.1 8.15e-16   NR EJW70189.1 6293 g11761 i2 45.5 0.623456790123457 101 52 61.1 3 318 22 1 100 EJW70189.1 hypothetical protein WUBG_18903 [Wuchereria bancrofti] diamond 303 80.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;