RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA429937", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA429937 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15730307 15730307 PRJNA429937_P_NODE_93833_length_321_cov_2.071918_g71243_i0 PRJNA429937 93833 321 2.071918 6.65085678 Methanobacterium sp. MB1 1379702 Archaea Archaea 448 3.289999999999999e-121   NTclustered gi|557945513|emb|HG425166.1| 1379702 g71243 i0 99.197 7.08722741433022 249 0 98 2 9 255 743204 742956 Methanobacterium sp. MB1 complete sequence blastn 2275 448 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. MB1
30439966 30439966 PRJNA429937_P_NODE_102593_length_295_cov_1.593985_g79979_i0 PRJNA429937 102593 295 1.593985 4.70225575 root 1 Root_unresolved Root_unresolved 46.2 0.00387   NR MEN6290573.1 2164 g79979 i0 91.7 1.95254237288136 24 2 24.4 0 3 74 208 231 MEN6290573.1 nucleotide sugar dehydrogenase [Methanobacterium sp.] diamond 576 46.6 0.991416309012876 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;