RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA429937", tax_clade = "Metamonada" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA429937 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29254447 29254447 PRJNA429937_P_NODE_97729_length_309_cov_2.928571_g75123_i0 PRJNA429937 97729 309 2.928571 9.04928439 Carpediemonas membranifera 201153 Fornicata other_Eukaryota 71.6 6.06e-12   NR KAG9395466.1 201153 g75123 i0 52.9 2.00970873786408 70 29 68 2 210 1 189 254 KAG9395466.1 Helicase conserved C-terminal domain [Carpediemonas membranifera] diamond 621 71.6 1 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera
31877257 31877257 PRJNA429937_P_NODE_84017_length_353_cov_2.500000_g61517_i0 PRJNA429937 84017 353 2.5 8.825 Carpediemonas membranifera 201153 Fornicata other_Eukaryota 67 4.21e-10   NR KAG9394902.1 201153 g61517 i0 63 0.390934844192635 46 17 39.1 0 260 123 176 221 KAG9394902.1 Helicase conserved C-terminal domain [Carpediemonas membranifera] diamond 138 67 1 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera
32856809 32856809 PRJNA429937_P_NODE_8780_length_1209_cov_4.836441_g5167_i0 PRJNA429937 8780 1209 4.836441 58.47257169 Paratrimastix pyriformis 342808 Preaxostyla other_Eukaryota 82 1.05e-12   NR KAJ4456615.1 342808 g5167 i0 25.8 0.749379652605459 302 166 62 12 1085 336 288 583 KAJ4456615.1 putative C1 family cathepsin B20 [Paratrimastix pyriformis] diamond 906 82 1 Eukaryota Metamonada   Preaxostyla     Paratrimastigidae Paratrimastix Paratrimastix pyriformis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;