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contig_metadata

33 rows where bioproject = "PRJNA429937", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 33 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 33 ✖

bioproject 1

  • PRJNA429937 · 33 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
427310 427310 PRJNA429937_P_NODE_72421_length_393_cov_4.403846_g50605_i0 PRJNA429937 72421 393 4.403846 17.30711478 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 396 1.51e-105   NTclustered gi|2874253938|emb|OY970263.1| 412054 g50605 i0 85.309 101.913486005089 388 52 98 5 1 385 752134 752519 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 40052 396 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
2976293 2976293 PRJNA429937_P_NODE_110343_length_273_cov_4.766393_g87721_i0 PRJNA429937 110343 273 4.766393 13.01225289 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 278 3.8e-70   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g87721 i0 85.199 57.8608058608059 277 34 100 7 1 273 1101650 1101923 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 15796 278 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica
2977144 2977144 PRJNA429937_P_NODE_31083_length_652_cov_7.662921_g18959_i0 PRJNA429937 31083 652 7.662921 49.96224492 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 486 1.5e-132   NTclustered gi|575456455|gb|CP007128.1| 861299 g18959 i0 86.667 59.3726993865031 450 46 69 12 28 474 3042943 3042505 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 38711 486 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
6805143 6805143 PRJNA429937_P_NODE_77926_length_373_cov_3.101744_g55653_i0 PRJNA429937 77926 373 3.101744 11.56950512 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 87.9 9.73e-13   NTclustered gi|2874253728|emb|OY969570.1| 412054 g55653 i0 93.333 0.160857908847185 60 3 16 1 56 115 3507559 3507501 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 60 87.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
6805284 6805284 PRJNA429937_P_NODE_86486_length_345_cov_2.205696_g63938_i0 PRJNA429937 86486 345 2.205696 7.6096512 uncultured Gemmatimonadaceae bacterium 246130 Bacteria Bacteria 113 1.48e-20   NTclustered gi|2874253995|emb|OY970320.1| 246130 g63938 i0 84.167 28.1188405797101 120 15 34 4 223 340 3082163 3082046 MAG: uncultured Gemmatimonadaceae bacterium isolate MFD00031.bin.c.2 genome assembly, chromosome: 1 blastn 9701 113 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   uncultured Gemmatimonadaceae bacterium
8079045 8079045 PRJNA429937_P_NODE_120207_length_248_cov_1.684932_g97581_i0 PRJNA429937 120207 248 1.684932 4.17863136 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 91.6 4.75e-14   NTclustered gi|2108314823|gb|CP070670.1| 2026742 g97581 i0 94.828 12.9798387096774 58 3 23 0 86 143 1009394 1009451 MAG: Gemmatimonadetes bacterium isolate bin741 chromosome blastn 3219 91.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
8079357 8079357 PRJNA429937_P_NODE_154587_length_165_cov_1.823529_g131960_i0 PRJNA429937 154587 165 1.823529 3.00882285 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 172 1.02e-38   NTclustered gi|2874254163|emb|OY970395.1| 412054 g131960 i0 85.542 91.4727272727273 166 22 100 2 1 165 3369770 3369934 MAG: uncultured Gemmatimonadales bacterium isolate MFD05684.bin.c.1 genome assembly, chromosome: 1 blastn 15093 172 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
10015471 10015471 PRJNA429937_P_NODE_150468_length_180_cov_2.993377_g127841_i0 PRJNA429937 150468 180 2.993377 5.3880786 FCB group 1783270 Bacteria Bacteria 207 3.08e-49   NTclustered gi|2874254107|emb|OY970192.1| 412054 g127841 i0 88.757 90.9777777777778 169 19 94 0 7 175 1445991 1445823 MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 blastn 16376 207 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
10629977 10629977 PRJNA429937_P_NODE_1649_length_2267_cov_27.888740_g986_i0 PRJNA429937 1649 2267 27.88874 632.2377358 Longimicrobium sp. 2029185 Bacteria Bacteria 416 3.29e-137   NR HST59186.1 2029185 g986 i0 83.2 0.660344067048963 244 41 32.3 0 1368 637 1 244 HST59186.1 HD domain-containing phosphohydrolase [Longimicrobium sp.] diamond 1497 416 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
10630389 10630389 PRJNA429937_P_NODE_33289_length_629_cov_2.918333_g20506_i0 PRJNA429937 33289 629 2.918333 18.35631457 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 87.9 1.71e-12   NTclustered gi|2874253728|emb|OY969570.1| 412054 g20506 i0 93.333 0.095389507154213 60 3 10 1 56 115 3507559 3507501 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 60 87.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
10630520 10630520 PRJNA429937_P_NODE_39369_length_575_cov_3.016484_g24819_i0 PRJNA429937 39369 575 3.016484 17.344783 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 280 1.07e-89   NR MBX3146269.1 2448054 g24819 i0 87.3 4.74782608695652 150 19 78.3 0 510 61 16 165 MBX3146269.1 restriction endonuclease subunit S [Gemmatimonadales bacterium] diamond 2730 280 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
12566488 12566488 PRJNA429937_P_NODE_63170_length_432_cov_3.503722_g32814_i6 PRJNA429937 63170 432 3.503722 15.13607904 Pseudomonadati 3379134 Bacteria Bacteria 62.1 6.93e-5   NTclustered gi|575461033|gb|CP007129.1| 861299 g32814 i6 95 1.33101851851852 40 1 9 1 4 42 984589 984550 Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence blastn 575 62.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
13181273 13181273 PRJNA429937_P_NODE_8911_length_1201_cov_7.524744_g5247_i0 PRJNA429937 8911 1201 7.524744 90.37217544 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 885 0   NTclustered gi|575456455|gb|CP007128.1| 861299 g5247 i0 89.437 107.751873438801 710 63 91 12 94 795 3043861 3043156 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 129410 885 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
15728543 15728543 PRJNA429937_P_NODE_13653_length_991_cov_5.138254_g5247_i1 PRJNA429937 13653 991 5.138254 50.92009714 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 785 0   NTclustered gi|575456455|gb|CP007128.1| 861299 g5247 i1 89.711 118.562058526741 622 55 62 9 282 898 3043244 3043861 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 117495 785 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
16390228 16390228 PRJNA429937_P_NODE_74433_length_385_cov_10.946629_g52415_i0 PRJNA429937 74433 385 10.946629 42.14452165 Gemmatirosa 1706036 Bacteria Bacteria 401 3.169999999999999e-107   NTclustered gi|2874253995|emb|OY970320.1| 246130 g52415 i0 86.154 98.8051948051948 390 32 100 13 1 385 232053 231681 MAG: uncultured Gemmatimonadaceae bacterium isolate MFD00031.bin.c.2 genome assembly, chromosome: 1 blastn 38040 403 0.995037220843672 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   uncultured Gemmatimonadaceae bacterium
18277303 18277303 PRJNA429937_P_NODE_113475_length_265_cov_3.470339_g90852_i0 PRJNA429937 113475 265 3.470339 9.19639835 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 58.4 5.21e-4   NTclustered gi|2108151088|gb|CP070722.1| 2026742 g90852 i0 94.595 0.139622641509434 37 2 14 0 185 221 383548 383584 MAG: Gemmatimonadetes bacterium isolate bin464 chromosome blastn 37 58.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
18278135 18278135 PRJNA429937_P_NODE_32615_length_635_cov_7.599010_g20027_i0 PRJNA429937 32615 635 7.59901 48.2537135 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 486 1.4599999999999997e-132   NTclustered gi|575456455|gb|CP007128.1| 861299 g20027 i0 86.667 60.9527559055118 450 46 70 12 28 474 3042943 3042505 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 38705 486 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
20828505 20828505 PRJNA429937_P_NODE_47377_length_517_cov_3.608607_g30727_i0 PRJNA429937 47377 517 3.608607 18.65649819 FCB group 1783270 Bacteria Bacteria 90.9 3.37e-19   NR MDX1622694.1 2026742 g30727 i0 51.8 2.04835589941973 83 35 45.3 1 94 327 67 149 MDX1622694.1 DNA polymerase ligase N-terminal domain-containing protein [Gemmatimonadota bacterium] diamond 1059 90.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
24652654 24652654 PRJNA429937_P_NODE_26580_length_710_cov_6.317181_g5247_i5 PRJNA429937 26580 710 6.317181 44.8519851 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 808 0   NTclustered gi|575456455|gb|CP007128.1| 861299 g5247 i5 90.338 161.825352112676 621 53 87 7 94 710 3043861 3043244 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 114896 808 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
24652918 24652918 PRJNA429937_P_NODE_37220_length_592_cov_6.822380_g5247_i6 PRJNA429937 37220 592 6.82238 40.3884896 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 503 1.3399999999999996e-137   NTclustered gi|575456455|gb|CP007128.1| 861299 g5247 i6 88.571 62.6570945945946 420 41 80 7 177 592 3043861 3043445 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 37093 503 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
24653650 24653650 PRJNA429937_P_NODE_75780_length_380_cov_11.393162_g53643_i0 PRJNA429937 75780 380 11.393162 43.2940156 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 398 4.0399999999999992e-106   NTclustered gi|575456455|gb|CP007128.1| 861299 g53643 i0 86.34 85.5315789473684 388 26 100 16 1 380 3042727 3043095 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 32502 398 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
26886072 26886072 PRJNA429937_P_NODE_38121_length_585_cov_2.210432_g23936_i0 PRJNA429937 38121 585 2.210432 12.9310272 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 47.4 0.0066   NR NJD18519.1 2026742 g23936 i0 33.8 0.41025641025641 80 47 37.9 1 39 260 32 111 NJD18519.1 type II toxin-antitoxin system VapC family toxin [Gemmatimonadota bacterium] diamond 240 47.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27138525 27138525 PRJNA429937_P_NODE_29182_length_675_cov_4.654799_g17662_i0 PRJNA429937 29182 675 4.654799 31.41989325 Gemmatimonadetes bacterium 13_1_4 1805185 Bacteria Bacteria 77.4 1.63e-14   NR OLC85640.1 1805185 g17662 i0 54.2 0.32 72 28 29.8 2 484 284 1 72 OLC85640.1 MAG: hypothetical protein AUI86_11850 [Gemmatimonadetes bacterium 13_1_40CM_3_66_12] diamond 216 77.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadetes bacterium 13_1_40CM_3_66_12
27296953 27296953 PRJNA429937_P_NODE_111603_length_270_cov_2.775934_g88981_i0 PRJNA429937 111603 270 2.775934 7.4950218 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 47.8 8.75e-4   NR MEE8551477.1 2026742 g88981 i0 56.1 0.455555555555556 41 18 45.6 0 72 194 508 548 MEE8551477.1 hypothetical protein [Gemmatimonadota bacterium] diamond 123 47.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27408544 27408544 PRJNA429937_P_NODE_13903_length_983_cov_3.435010_g8214_i0 PRJNA429937 13903 983 3.43501 33.7661483 Bacteria 2 Bacteria Bacteria 117 5.61e-28   NR WP_331125014.1 2029185 g8214 i0 47.2 4.91047812817904 123 65 37.5 0 3 371 32 154 WP_331125014.1 MarR family transcriptional regulator [Longimicrobium sp.] diamond 4827 117 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
28481864 28481864 PRJNA429937_P_NODE_82826_length_357_cov_2.088415_g60346_i0 PRJNA429937 82826 357 2.088415 7.45564155 Pseudomonadati 3379134 Bacteria Bacteria 124 9.03e-32   NR HEX7122356.1 2026741 g60346 i0 70.8 1.26050420168067 72 21 60.5 0 125 340 251 322 HEX7122356.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 450 124 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28939024 28939024 PRJNA429937_P_NODE_150968_length_178_cov_3.328859_g128341_i0 PRJNA429937 150968 178 3.328859 5.92536902 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 44.7 0.00334   NR HEX7121836.1 2026741 g128341 i0 54.5 0.926966292134832 55 21 86 1 26 178 386 440 HEX7121836.1 ABC transporter permease [Gemmatimonadaceae bacterium] diamond 165 44.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29128588 29128588 PRJNA429937_P_NODE_120469_length_247_cov_2.788991_g97843_i0 PRJNA429937 120469 247 2.788991 6.88880777 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 50.4 7.5e-5   NR MEO8448602.1 2026742 g97843 i0 84.6 0.315789473684211 26 4 31.6 0 247 170 451 476 MEO8448602.1 amidohydrolase family protein [Gemmatimonadota bacterium] diamond 78 50.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30029168 30029168 PRJNA429937_P_NODE_60251_length_446_cov_3.124700_g8214_i6 PRJNA429937 60251 446 3.1247 13.936162 Bacteria 2 Bacteria Bacteria 116 5.05e-30   NR WP_331125014.1 2029185 g8214 i6 47.2 10.2040358744395 123 65 82.7 0 75 443 32 154 WP_331125014.1 MarR family transcriptional regulator [Longimicrobium sp.] diamond 4551 117 0.991452991452991 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
30233702 30233702 PRJNA429937_P_NODE_9812_length_1153_cov_5.402135_g5771_i0 PRJNA429937 9812 1153 5.402135 62.28661655 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 486 2.239999999999999e-168   NR HEX9727007.1 2448054 g5771 i0 75.5 4.15784908933218 319 78 83 0 23 979 76 394 HEX9727007.1 Fic family protein [Gemmatimonadales bacterium] diamond 4794 486 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30755820 30755820 PRJNA429937_P_NODE_62114_length_437_cov_3.017157_g8214_i7 PRJNA429937 62114 437 3.017157 13.18497609 Bacteria 2 Bacteria Bacteria 116 6.43e-30   NR WP_331125014.1 2029185 g8214 i7 47.2 10.9221967963387 123 65 84.4 0 66 434 32 154 WP_331125014.1 MarR family transcriptional regulator [Longimicrobium sp.] diamond 4773 116 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
32652571 32652571 PRJNA429937_P_NODE_62980_length_433_cov_3.096535_g8214_i8 PRJNA429937 62980 433 3.096535 13.40799655 Bacteria 2 Bacteria Bacteria 116 6.2000000000000005e-30   NR WP_331125014.1 2029185 g8214 i8 47.2 11.0230946882217 123 65 85.2 0 62 430 32 154 WP_331125014.1 MarR family transcriptional regulator [Longimicrobium sp.] diamond 4773 116 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
32699296 32699296 PRJNA429937_P_NODE_64440_length_426_cov_4.659950_g17662_i1 PRJNA429937 64440 426 4.65995 19.851387 Gemmatimonadetes bacterium 13_1_4 1805185 Bacteria Bacteria 75.5 1.05e-14   NR OLC85640.1 1805185 g17662 i1 54.9 0.5 71 27 46.5 2 235 38 1 71 OLC85640.1 MAG: hypothetical protein AUI86_11850 [Gemmatimonadetes bacterium 13_1_40CM_3_66_12] diamond 213 75.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadetes bacterium 13_1_40CM_3_66_12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;