RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA429937", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 5 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 5 ✖

bioproject 1

  • PRJNA429937 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
425927 425927 PRJNA429937_P_NODE_141921_length_202_cov_3.069364_g119294_i0 PRJNA429937 141921 202 3.069364 6.20011528 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 176 1e-39   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g119294 i0 95.455 285.59900990099 110 5 54 0 93 202 1595598 1595707 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 57691 176 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium
13180484 13180484 PRJNA429937_P_NODE_46191_length_525_cov_3.262097_g29811_i0 PRJNA429937 46191 525 3.262097 17.12600925 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 311 7.69e-80   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g29811 i0 83.095 177.407619047619 349 52 95 7 7 351 1595461 1595116 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 93139 311 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium
15729219 15729219 PRJNA429937_P_NODE_34433_length_618_cov_2.757216_g21309_i0 PRJNA429937 34433 618 2.757216 17.03959488 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 311 9.16e-80   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g21309 i0 83.095 144.778317152104 349 52 78 7 163 507 1595116 1595461 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 89473 311 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium
23377634 23377634 PRJNA429937_P_NODE_101379_length_298_cov_3.122677_g78767_i0 PRJNA429937 101379 298 3.122677 9.30557746 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 180 1.22e-40   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g78767 i0 95.536 191.862416107383 112 5 59 0 11 122 1595598 1595709 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 57175 180 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium
29018869 29018869 PRJNA429937_P_NODE_47008_length_519_cov_7.344898_g30441_i0 PRJNA429937 47008 519 7.344898 38.12002062 root 1 Root_unresolved Root_unresolved 64.3 1.94e-8   NR WP_295056764.1 261512 g30441 i0 60.4 0.826589595375723 48 19 27.7 0 517 374 11 58 WP_295056764.1 BspA family leucine-rich repeat surface protein [uncultured Fibrobacter sp.] diamond 429 64.7 0.993817619783617 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter uncultured Fibrobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;