RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA429937", tax_clade = "Discoba" and tax_phylum = "Euglenozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 3 ✖

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA429937 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6805440 6805440 PRJNA429937_P_NODE_95806_length_315_cov_1.632867_g73209_i0 PRJNA429937 95806 315 1.632867 5.14353105 Leishmania braziliensis 5660 Euglenozoa other_Eukaryota 58.4 6.34e-4   NTclustered gi|2593260433|emb|OY748517.1| 5660 g73209 i0 100 0.19047619047619 31 0 10 0 28 58 1128788 1128758 Leishmania braziliensis isolate MHOM/BR/75/M2903 genome assembly, chromosome: 31 blastn 60 58.4 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania braziliensis
13180983 13180983 PRJNA429937_P_NODE_71731_length_396_cov_3.261580_g49981_i0 PRJNA429937 71731 396 3.26158 12.9158568 Leishmania tarentolae 5689 Euglenozoa other_Eukaryota 69.4 3.76e-7   NTclustered gi|37813096|gb|AY423868.1| 5689 g49981 i0 78.899 2.66161616161616 109 17 27 4 73 177 1863 1969 Leishmania tarentolae 70 kDa heat shock protein (hsp70) gene, complete cds blastn 1054 69.4 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania tarentolae
29065306 29065306 PRJNA429937_P_NODE_131508_length_221_cov_9.739583_g108881_i0 PRJNA429937 131508 221 9.739583 21.52447843 Leishmania mexicana MHOM/GT/2 5665 Euglenozoa other_Eukaryota 42.7 0.0282   NR XP_003871941.1 929439 g108881 i0 44.7 0.638009049773756 47 21 63.8 1 207 67 60 101 XP_003871941.1 putative ATPase alpha subunit [Leishmania mexicana MHOM/GT/2001/U1103] diamond 141 42.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania mexicana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;