RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA429937", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA429937 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8080692 8080692 PRJNA429937_P_NODE_76347_length_379_cov_1.728571_g54170_i0 PRJNA429937 76347 379 1.728571 6.55128409 Paramoeba branchiphila 308475 Discosea other_Eukaryota 135 3.4900000000000006e-27   NTclustered gi|226347442|gb|FJ807261.1| 308475 g54170 i0 87.826 24.1398416886544 115 14 57 0 1 115 253 367 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 9149 135 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
31719246 31719246 PRJNA429937_P_NODE_44077_length_539_cov_5.090196_g28229_i0 PRJNA429937 44077 539 5.090196 27.43615644 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 202 2.05e-62   NR XP_004368237.1 1257118 g28229 i0 73.3 0.812615955473098 146 35 80.7 3 25 459 65 207 XP_004368237.1 Hypothetical protein ACA1_295680 [Acanthamoeba castellanii str. Neff] diamond 438 202 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32604980 32604980 PRJNA429937_P_NODE_60460_length_445_cov_3.072115_g40675_i0 PRJNA429937 60460 445 3.072115 13.67091175 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 93.6 1.86e-19   NR XP_004340892.1 1257118 g40675 i0 88.2 0.343820224719101 51 6 34.4 0 324 172 176 226 XP_004340892.1 RAD51, putative [Acanthamoeba castellanii str. Neff] diamond 153 93.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;