RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA421571" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA421571 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27265388 27265388 PRJNA421571_P_NODE_74743_length_290_cov_1.078341_g72194_i0 PRJNA421571 74743 290 1.078341 3.1271889 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 167 5.129999999999999e-47   NR HZX14979.1 2202153 g72194 i0 78.9 0.982758620689655 95 20 98.3 0 5 289 236 330 HZX14979.1 hypothetical protein [Thermodesulfobacteriota bacterium] diamond 285 167 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
29997615 29997615 PRJNA421571_P_NODE_94911_length_249_cov_0.875000_g92362_i0 PRJNA421571 94911 249 0.875 2.17875 FCB group 1783270 Bacteria Bacteria 77 3.46e-14   NR WP_025323774.1 1035120 g92362 i0 56.9 3.46987951807229 72 31 86.7 0 219 4 525 596 WP_025323774.1 DNA helicase RecQ [Deferrisoma camini] diamond 864 77 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Deferrisomatia Deferrisomatales Deferrisomataceae Deferrisoma Deferrisoma camini
30075523 30075523 PRJNA421571_P_NODE_69012_length_307_cov_1.307692_g66463_i0 PRJNA421571 69012 307 1.307692 4.01461444 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 179 1.979999999999999e-55   NR GJM17675.1 2202153 g66463 i0 85.3 0.996742671009772 102 15 99.7 0 307 2 43 144 GJM17675.1 MAG: hypothetical protein DHS20C13_30020 [Thermodesulfobacteriota bacterium] diamond 306 179 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
30486439 30486439 PRJNA421571_P_NODE_23133_length_720_cov_3.714065_g20722_i0 PRJNA421571 23133 720 3.714065 26.741268 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 45.4 0.0418   NR MEW6335375.1 2202153 g20722 i0 36 0.370833333333333 89 43 35.8 3 409 666 14 91 MEW6335375.1 tripartite tricarboxylate transporter TctB family protein [Thermodesulfobacteriota bacterium] diamond 267 45.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
30802331 30802331 PRJNA421571_P_NODE_85994_length_263_cov_1.610526_g83445_i0 PRJNA421571 85994 263 1.610526 4.23568338 Desulfovibrio sp. 885 Bacteria Bacteria 43.1 0.0171   NR MCR5815042.1 885 g83445 i0 46.8 0.536121673003802 47 24 53.6 1 3 143 100 145 MCR5815042.1 Hsp20/alpha crystallin family protein [Desulfovibrio sp.] diamond 141 43.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.
30977034 30977034 PRJNA421571_P_NODE_93774_length_250_cov_0.870056_g91225_i0 PRJNA421571 93774 250 0.870056 2.17514 Pseudomonadati 3379134 Bacteria Bacteria 43.1 0.0314   NR GFO54927.1 2740183 g91225 i0 44.7 3.192 76 33 84 2 40 249 2396 2468 GFO54927.1 hypothetical protein GMSM_19340 [Geomonas sp. Red276] diamond 798 43.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geomonas Geomonas sp. Red276
30992051 30992051 PRJNA421571_P_NODE_6954_length_1428_cov_3.011808_g5902_i0 PRJNA421571 6954 1428 3.011808 43.00861824 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 207 4.400000000000001e-59   NR MBL7203351.1 2049433 g5902 i0 48.9 0.476890756302521 227 112 47.5 2 18 695 106 329 MBL7203351.1 hypothetical protein [Desulfobacteraceae bacterium] diamond 681 207 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;