RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA421571", tax_phylum = "Nitrospirota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Nitrospirota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA421571 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28560121 28560121 PRJNA421571_P_NODE_89627_length_255_cov_1.593407_g87078_i0 PRJNA421571 89627 255 1.593407 4.06318785 Nitrospira cf. moscoviensis SBR1 96242 Bacteria Bacteria 176 1.88e-52   NR WP_086425210.1 96242 g87078 i0 100 1.97647058823529 84 0 98.8 0 254 3 204 287 WP_086425210.1 hypothetical protein [Nitrospira cf. moscoviensis SBR1015] diamond 504 176 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira cf. moscoviensis SBR1015
28654725 28654725 PRJNA421571_P_NODE_57747_length_349_cov_1.231884_g55198_i0 PRJNA421571 57747 349 1.231884 4.29927516 Nitrospiria bacterium 2306052 Bacteria Bacteria 42.4 0.0308   NR MFQ5598303.1 2306052 g55198 i0 47.2 0.30945558739255 36 19 30.9 0 170 63 11 46 MFQ5598303.1 hypothetical protein [Nitrospiria bacterium] diamond 108 42.4 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria       Nitrospiria bacterium
30644220 30644220 PRJNA421571_P_NODE_63333_length_327_cov_1.212598_g60784_i0 PRJNA421571 63333 327 1.212598 3.96519546 Nitrospira sp. 70125 Bacteria Bacteria 58.2 5.2100000000000003e-08   NR MBS0170750.1 70125 g60784 i0 34.6 0.954128440366973 104 60 93.6 3 16 321 21 118 MBS0170750.1 nuclear transport factor 2 family protein [Nitrospira sp.] diamond 312 58.2 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;