RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA421571" and tax_phylum = "Nitrososphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrososphaerota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA421571 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13176741 13176741 PRJNA421571_P_NODE_41971_length_448_cov_2.493333_g39423_i0 PRJNA421571 41971 448 2.493333 11.17013184 Candidatus Caldarchaeum subterraneum 311458 Archaea Archaea 52.8 0.043   NTclustered gi|315425986|dbj|AP011843.1| 311458 g39423 i0 100 0.0625 28 0 6 0 45 72 28651 28678 Candidatus Caldiarchaeum subterraneum DNA, partial sequence, fosmid clone: JFF032_D08 blastn 28 52.8 1 Archaea   Thermoproteati Nitrososphaerota   Candidatus Caldarchaeales Candidatus Caldarchaeaceae Candidatus Caldarchaeum Candidatus Caldarchaeum subterraneum
20212335 20212335 PRJNA421571_P_NODE_72416_length_296_cov_1.515695_g69867_i0 PRJNA421571 72416 296 1.515695 4.4864572 Candidatus Nitrosocosmicus 1826864 Archaea Archaea 508 1.36e-139   NTclustered gi|937513727|gb|CP012850.1| 1353260 g69867 i0 97.635 73.972972972973 296 7 100 0 1 296 848990 848695 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 21896 508 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;