RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJNA421571" and tax_phylum = "Candidatus Altimarinota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA421571 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22099944 22099944 PRJNA421571_P_NODE_56078_length_357_cov_0.954225_g53529_i0 PRJNA421571 56078 357 0.954225 3.40658325 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 302 3.0400000000000007e-77   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g53529 i0 89.256 3.33893557422969 242 24 68 1 1 242 1252140 1251901 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 1192 302 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64
26600502 26600502 PRJNA421571_P_NODE_19641_length_807_cov_4.460490_g17392_i0 PRJNA421571 19641 807 4.46049 35.9961543 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 60.8 1.19e-6   NR NUJ98053.1 2044595 g17392 i0 47.1 0.315985130111524 85 42 30.5 2 266 21 236 320 NUJ98053.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 255 60.8 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
26917468 26917468 PRJNA421571_P_NODE_82742_length_270_cov_2.091371_g80193_i0 PRJNA421571 82742 270 2.091371 5.6467017 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 79.7 4.95e-15   NR MBW7954622.1 2044595 g80193 i0 55.8 0.855555555555556 77 34 85.6 0 256 26 471 547 MBW7954622.1 serine/threonine-protein phosphatase [Candidatus Altimarinota bacterium] diamond 231 79.7 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
27850167 27850167 PRJNA421571_P_NODE_49604_length_392_cov_5.247649_g47056_i0 PRJNA421571 49604 392 5.247649 20.57078408 Bacteria 2 Bacteria Bacteria 139 4.09e-40   NR RAL57832.1 1912928 g47056 i0 87.5 1.82142857142857 80 10 61.2 0 92 331 1 80 RAL57832.1 50S ribosomal protein L34 [Candidatus Gracilibacteria bacterium GN02-872] diamond 714 140 0.992857142857143 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium GN02-872
28149591 28149591 PRJNA421571_P_NODE_107265_length_239_cov_2.596386_g104716_i0 PRJNA421571 107265 239 2.596386 6.20536254 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 77.8 1.59e-14   NR MDD3793364.1 2044595 g104716 i0 62.1 0.728033472803347 58 22 72.8 0 176 3 595 652 MDD3793364.1 ABC transporter substrate-binding protein [Candidatus Altimarinota bacterium] diamond 174 77.8 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
28528571 28528571 PRJNA421571_P_NODE_43807_length_433_cov_1.325000_g41259_i0 PRJNA421571 43807 433 1.325 5.73725 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 103 1.23e-24   NR MCP4522908.1 2044595 g41259 i0 57.3 1.48267898383372 103 43 71.4 1 29 337 1 102 MCP4522908.1 peptidylprolyl isomerase [Candidatus Altimarinota bacterium] diamond 642 103 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
29286061 29286061 PRJNA421571_P_NODE_90049_length_254_cov_1.701657_g87500_i0 PRJNA421571 90049 254 1.701657 4.32220878 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 114 1.9400000000000003e-27   NR MCD5380357.1 2044595 g87500 i0 72 0.968503937007874 82 23 96.9 0 247 2 48 129 MCD5380357.1 protein translocase subunit SecD [Candidatus Altimarinota bacterium] diamond 246 114 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
30739113 30739113 PRJNA421571_P_NODE_88274_length_258_cov_1.610811_g85725_i0 PRJNA421571 88274 258 1.610811 4.15589238 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 46.6 0.00193   NR MDD5769450.1 2044595 g85725 i0 44.4 0.627906976744186 54 29 61.6 1 161 3 7 60 MDD5769450.1 ATP-dependent zinc metalloprotease FtsH [Candidatus Altimarinota bacterium] diamond 162 46.6 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
30739118 30739118 PRJNA421571_P_NODE_97234_length_247_cov_1.770115_g94685_i0 PRJNA421571 97234 247 1.770115 4.37218405 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 78.6 8.91e-15   NR MBW7954726.1 2044595 g94685 i0 53.8 1.79757085020243 78 36 94.7 0 247 14 132 209 MBW7954726.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 444 78.6 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
31466321 31466321 PRJNA421571_P_NODE_89416_length_255_cov_2.505495_g86867_i0 PRJNA421571 89416 255 2.505495 6.38901225 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 87.4 1.32e-18   NR MDD5770450.1 2044595 g86867 i0 55.3 1.90588235294118 85 37 98.8 1 254 3 129 213 MDD5770450.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 486 87.4 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
31687477 31687477 PRJNA421571_P_NODE_82957_length_270_cov_1.329949_g80408_i0 PRJNA421571 82957 270 1.329949 3.5908623 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 105 7.59e-26   NR NVP17780.1 2044595 g80408 i0 56.7 1 90 38 98.9 1 269 3 63 152 NVP17780.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 270 105 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;