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contig_metadata

13 rows where bioproject = "PRJNA421571" and tax_kingdom = "Pararnavirae"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 13 ✖

bioproject 1

  • PRJNA421571 · 13 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2972832 2972832 PRJNA421571_P_NODE_16063_length_922_cov_2.661955_g14060_i0 PRJNA421571 16063 922 2.661955 24.5432251 Endogenous cotton pararetrovirus 3062848 Viruses Viruses 1703 0   NTclustered gi|2550532683|gb|OR269938.1| 3062848 g14060 i0 100 3.76030368763557 922 0 100 0 1 922 520 1441 MAG: Endogenous cotton pararetrovirus isolate MAY17 genomic sequence blastn 3467 1703 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales     Endogenous cotton pararetrovirus
4913409 4913409 PRJNA421571_P_NODE_14264_length_989_cov_3.264192_g12398_i0 PRJNA421571 14264 989 3.264192 32.28285888 Caulimovirus 10639 Viruses Viruses 1827 0   NTclustered gi|2550532687|gb|OR269942.1| 3062848 g12398 i0 100 21.6167846309403 989 0 100 0 1 989 4471 5459 MAG: Endogenous cotton pararetrovirus isolate APR19 genomic sequence blastn 21379 1827 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales     Endogenous cotton pararetrovirus
6799612 6799612 PRJNA421571_P_NODE_10326_length_1180_cov_13.818428_g8869_i0 PRJNA421571 10326 1180 13.818428 163.0574504 Endogenous cotton pararetrovirus 3062848 Viruses Viruses 2163 0   NTclustered gi|2550532685|gb|OR269940.1| 3062848 g8869 i0 100 16.4313559322034 1171 0 99 0 1 1171 7898 9068 MAG: Endogenous cotton pararetrovirus isolate CLR01 genomic sequence blastn 19389 2163 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales     Endogenous cotton pararetrovirus
8075450 8075450 PRJNA421571_P_NODE_15687_length_934_cov_10.016260_g13714_i0 PRJNA421571 15687 934 10.01626 93.5518684 Endogenous cotton pararetrovirus 3062848 Viruses Viruses 1557 0   NTclustered gi|2550532685|gb|OR269940.1| 3062848 g13714 i0 100 2.49892933618844 843 0 90 0 1 843 843 1 MAG: Endogenous cotton pararetrovirus isolate CLR01 genomic sequence blastn 2334 1557 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales     Endogenous cotton pararetrovirus
14451827 14451827 PRJNA421571_P_NODE_39072_length_476_cov_0.955335_g36525_i0 PRJNA421571 39072 476 0.955335 4.5473946 Endogenous cotton pararetrovirus 3062848 Viruses Viruses 874 0   NTclustered gi|2550532687|gb|OR269942.1| 3062848 g36525 i0 99.79 21.5693277310924 476 1 100 0 1 476 3355 2880 MAG: Endogenous cotton pararetrovirus isolate APR19 genomic sequence blastn 10267 874 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales     Endogenous cotton pararetrovirus
15113576 15113576 PRJNA421571_P_NODE_45932_length_417_cov_2.223837_g43384_i0 PRJNA421571 45932 417 2.223837 9.27340029 Caulimovirus 10639 Viruses Viruses 771 0   NTclustered gi|2795441695|gb|PP943205.1| 3062848 g43384 i0 100 8 417 0 100 0 1 417 515 99 Endogenous cotton pararetrovirus isolate EVE-GA_MitS5-Sy genomic sequence blastn 3336 771 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales     Endogenous cotton pararetrovirus
15724832 15724832 PRJNA421571_P_NODE_16653_length_900_cov_27.447400_g13714_i1 PRJNA421571 16653 900 27.4474 247.0266 Endogenous cotton pararetrovirus 3062848 Viruses Viruses 905 0   NTclustered gi|2550532685|gb|OR269940.1| 3062848 g13714 i1 100 3.26222222222222 490 0 89 0 320 809 490 1 MAG: Endogenous cotton pararetrovirus isolate CLR01 genomic sequence blastn 2936 905 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales     Endogenous cotton pararetrovirus
16388139 16388139 PRJNA421571_P_NODE_30173_length_587_cov_1.675097_g27651_i0 PRJNA421571 30173 587 1.675097 9.83281939 Caulimovirus 10639 Viruses Viruses 1085 0   NTclustered gi|2550532687|gb|OR269942.1| 3062848 g27651 i0 100 19 587 0 100 0 1 587 1116 530 MAG: Endogenous cotton pararetrovirus isolate APR19 genomic sequence blastn 11153 1085 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales     Endogenous cotton pararetrovirus
17000761 17000761 PRJNA421571_P_NODE_55014_length_362_cov_1.256055_g52465_i0 PRJNA421571 55014 362 1.256055 4.5469191 cotton virus A 3072933 Viruses Viruses 327 5.09e-85   NTclustered gi|2571356282|gb|OR184923.1| 3072933 g52465 i0 88.278 16.5580110497238 273 32 75 0 71 343 3776 4048 Cotton virus A isolate MS2022, complete genome blastn 5994 327 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus cotton virus A
18274003 18274003 PRJNA421571_P_NODE_22655_length_732_cov_1.336874_g20259_i0 PRJNA421571 22655 732 1.336874 9.78591768 Endogenous cotton pararetrovirus 3062848 Viruses Viruses 1347 0   NTclustered gi|2550532687|gb|OR269942.1| 3062848 g20259 i0 99.863 22.5833333333333 732 1 100 0 1 732 4164 3433 MAG: Endogenous cotton pararetrovirus isolate APR19 genomic sequence blastn 16531 1347 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales     Endogenous cotton pararetrovirus
24037697 24037697 PRJNA421571_P_NODE_5119_length_1616_cov_2.100454_g4314_i0 PRJNA421571 5119 1616 2.100454 33.94333664 Caulimovirus 10639 Viruses Viruses 2976 0   NTclustered gi|2550532687|gb|OR269942.1| 3062848 g4314 i0 99.876 20.4659653465347 1618 0 100 1 1 1616 2761 1144 MAG: Endogenous cotton pararetrovirus isolate APR19 genomic sequence blastn 33073 2976 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales     Endogenous cotton pararetrovirus
29443824 29443824 PRJNA421571_P_NODE_86870_length_261_cov_1.638298_g84321_i0 PRJNA421571 86870 261 1.638298 4.27595778 Endogenous cotton pararetrovirus 3062848 Viruses Viruses 67.8 1.05e-12   NR WLW14337.1 3062848 g84321 i0 84.8 0.379310344827586 33 5 37.9 0 3 101 46 78 WLW14337.1 MAG: RNase H protein [Endogenous cotton pararetrovirus] diamond 99 67.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales     Endogenous cotton pararetrovirus
30423550 30423550 PRJNA421571_P_NODE_57733_length_349_cov_1.376812_g55184_i0 PRJNA421571 57733 349 1.376812 4.80507388 Dahlia mosaic virus D1 213888 Viruses Viruses 72.8 3.75e-12   NR AEB54984.1 1006328 g55184 i0 46.6 0.627507163323782 73 39 62.8 0 2 220 735 807 AEB54984.1 polyprotein [Dahlia mosaic virus D10] diamond 219 72.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus tessellodahliae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;