RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA421571", tax_clade = "Sar" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA421571 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
424054 424054 PRJNA421571_P_NODE_78981_length_279_cov_2.097087_g76432_i0 PRJNA421571 78981 279 2.097087 5.85087273 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 65.5 2.73e-10   NR ETO13940.1 46433 g76432 i0 44.6 0.989247311827957 92 48 97.8 3 2 274 28 117 ETO13940.1 hypothetical protein RFI_23428 [Reticulomyxa filosa] diamond 276 65.5 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
2974911 2974911 PRJNA421571_P_NODE_88303_length_258_cov_1.459459_g85754_i0 PRJNA421571 88303 258 1.459459 3.76540422 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 157 1.24e-46   NR ETO03070.1 46433 g85754 i0 90.5 1.96511627906977 84 8 97.7 0 2 253 74 157 ETO03070.1 hypothetical protein RFI_34341 [Reticulomyxa filosa] diamond 507 157 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28339025 28339025 PRJNA421571_P_NODE_89646_length_255_cov_1.500000_g87097_i0 PRJNA421571 89646 255 1.5 3.825 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 127 2.19e-32   NR ETO30355.1 46433 g87097 i0 61.9 1.97647058823529 84 32 98.8 0 254 3 229 312 ETO30355.1 hypothetical protein RFI_06765, partial [Reticulomyxa filosa] diamond 504 127 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
30328939 30328939 PRJNA421571_P_NODE_60812_length_336_cov_1.756654_g58263_i0 PRJNA421571 60812 336 1.756654 5.90235744 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 80.9 1.73e-16   NR ETO36728.1 46433 g58263 i0 43.9 0.875 98 55 87.5 0 39 332 44 141 ETO36728.1 hypothetical protein RFI_00333 [Reticulomyxa filosa] diamond 294 80.9 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;