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contig_metadata

27 rows where bioproject = "PRJNA421571", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 27 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 27 ✖

bioproject 1

  • PRJNA421571 · 27 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6189051 6189051 PRJNA421571_P_NODE_5885_length_1531_cov_11.376543_g4986_i0 PRJNA421571 5885 1531 11.376543 174.17487333 Chthoniobacter sp. 2510640 Bacteria Bacteria 844 1.42e-305   NR MDR3405335.1 2510640 g4986 i0 88.6 0.909209666884389 464 53 90.9 0 1486 95 1 464 MDR3405335.1 translation elongation factor EF1A family protein [Chthoniobacter sp.] diamond 1392 844 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.
9351390 9351390 PRJNA421571_P_NODE_51848_length_379_cov_1.379085_g49299_i0 PRJNA421571 51848 379 1.379085 5.22673215 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 137 6.49e-35   NR RYD77759.1 2026800 g49299 i0 57 0.95778364116095 121 52 95.8 0 6 368 365 485 RYD77759.1 MAG: hypothetical protein EOP84_15150, partial [Verrucomicrobiaceae bacterium] diamond 363 137 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
11903189 11903189 PRJNA421571_P_NODE_93970_length_250_cov_0.870056_g91421_i0 PRJNA421571 93970 250 0.870056 2.17514 Opitutus sp. GAS368 1882749 Bacteria Bacteria 143 1.31e-29   NTclustered gi|1085764882|emb|LT629735.1| 1882749 g91421 i0 78.855 68.248 227 37 89 8 1 223 2052656 2052437 Opitutus sp. GAS368 genome assembly, chromosome: I blastn 17062 143 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. GAS368
14452964 14452964 PRJNA421571_P_NODE_80132_length_277_cov_0.970588_g77583_i0 PRJNA421571 80132 277 0.970588 2.68852876 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 324 4.89e-84   NTclustered gi|2874253779|emb|OY969763.1| 412056 g77583 i0 88.806 117.635379061372 268 25 95 5 14 277 3833276 3833542 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.c.2 genome assembly, chromosome: 1 blastn 32585 324 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
16388756 16388756 PRJNA421571_P_NODE_88133_length_258_cov_2.064865_g85584_i0 PRJNA421571 88133 258 2.064865 5.3273517 Verrucomicrobiota 74201 Bacteria Bacteria 335 2.079999999999999e-87   NTclustered gi|183579829|emb|AM905426.1| 320771 g85584 i0 90.625 95.0736434108527 256 18 98 5 4 256 1244 992 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 24529 337 0.99406528189911 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula
16999247 16999247 PRJNA421571_P_NODE_103494_length_243_cov_0.905882_g100945_i0 PRJNA421571 103494 243 0.905882 2.20129326 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 123 1.52e-30   NR RYD77759.1 2026800 g100945 i0 85 0.987654320987654 80 12 98.8 0 1 240 408 487 RYD77759.1 MAG: hypothetical protein EOP84_15150, partial [Verrucomicrobiaceae bacterium] diamond 240 123 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
17001610 17001610 PRJNA421571_P_NODE_87194_length_260_cov_2.379679_g84645_i0 PRJNA421571 87194 260 2.379679 6.1871654 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 257 4.68e-64   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g84645 i0 85.385 2.88461538461538 260 24 99 7 4 260 1386366 1386118 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 750 257 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
18275347 18275347 PRJNA421571_P_NODE_65675_length_318_cov_1.885714_g63126_i0 PRJNA421571 65675 318 1.885714 5.99657052 Pedosphaera parvula 1032527 Bacteria Bacteria 429 1.18e-115   NTclustered gi|183579829|emb|AM905426.1| 320771 g63126 i0 91.195 141.74213836478 318 24 100 3 1 318 979 666 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 45074 429 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula
19549376 19549376 PRJNA421571_P_NODE_58976_length_343_cov_3.422222_g56427_i0 PRJNA421571 58976 343 3.422222 11.73822146 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 161 3.7e-46   NR RYD65414.1 2026800 g56427 i0 70.2 0.997084548104956 114 31 99.7 2 342 1 118 228 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 342 161 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
26980685 26980685 PRJNA421571_P_NODE_74682_length_290_cov_1.359447_g72133_i0 PRJNA421571 74682 290 1.359447 3.9423963 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 100 2.7799999999999996e-23   NR MBM3888871.1 2026799 g72133 i0 51 3.97241379310345 96 46 99.3 1 288 1 58 152 MBM3888871.1 dihydrodipicolinate synthetase [Verrucomicrobiota bacterium] diamond 1152 100 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27423532 27423532 PRJNA421571_P_NODE_27763_length_627_cov_2.063177_g25259_i0 PRJNA421571 27763 627 2.063177 12.93611979 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 191 5.2499999999999995e-56   NR RYD65414.1 2026800 g25259 i0 76.6 0.5311004784689 111 26 53.1 0 2 334 225 335 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 333 191 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
27881891 27881891 PRJNA421571_P_NODE_85445_length_264_cov_1.612565_g82896_i0 PRJNA421571 85445 264 1.612565 4.2571716 Pseudomonadati 3379134 Bacteria Bacteria 65.1 4.74e-10   NR MEO6875900.1 2006848 g82896 i0 72.1 0.988636363636364 43 12 48.9 0 10 138 259 301 MEO6875900.1 ferritin-like domain-containing protein [Opitutaceae bacterium] diamond 261 65.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
27928485 27928485 PRJNA421571_P_NODE_101865_length_244_cov_0.900585_g99316_i0 PRJNA421571 101865 244 0.900585 2.1974274 Akkermansia sp. 1872421 Bacteria Bacteria 46.6 0.00169   NR MDO4752128.1 1872421 g99316 i0 52.8 2.20081967213115 36 17 44.3 0 17 124 491 526 MDO4752128.1 protein kinase [Akkermansia sp.] diamond 537 46.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia sp.
28086236 28086236 PRJNA421571_P_NODE_52705_length_374_cov_1.694352_g50156_i0 PRJNA421571 52705 374 1.694352 6.33687648 Luteolibacter sp. LG18 2819286 Bacteria Bacteria 196 1.27e-59   NR WP_338287453.1 2819286 g50156 i0 78 1.97326203208556 123 27 98.7 0 6 374 28 150 WP_338287453.1 dihydrodipicolinate synthase family protein [Luteolibacter sp. LG18] diamond 738 196 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. LG18
28212384 28212384 PRJNA421571_P_NODE_25986_length_661_cov_2.532313_g23509_i0 PRJNA421571 25986 661 2.532313 16.73858893 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 89 1.09e-17   NR MEO5753320.1 2201154 g23509 i0 30.3 0.885022692889561 195 108 81.2 6 26 562 34 216 MEO5753320.1 CAP domain-containing protein [Chthoniobacterales bacterium] diamond 585 89 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
28275706 28275706 PRJNA421571_P_NODE_95566_length_249_cov_0.875000_g93017_i0 PRJNA421571 95566 249 0.875 2.17875 Opitutales bacterium 2026772 Bacteria Bacteria 42.7 0.0391   NR MFI5337791.1 2026772 g93017 i0 35.1 0.686746987951807 57 35 68.7 1 202 32 60 114 MFI5337791.1 glycosyltransferase family 4 protein [Opitutales bacterium] diamond 171 42.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium
28702924 28702924 PRJNA421571_P_NODE_65307_length_320_cov_0.813765_g62758_i0 PRJNA421571 65307 320 0.813765 2.604048 PVC group 1783257 Bacteria Bacteria 43.5 0.045   NR MCC7517911.1 2499141 g62758 i0 31.8 3.590625 88 53 82.5 2 27 290 41 121 MCC7517911.1 LptF/LptG family permease [Verrucomicrobiia bacterium] diamond 1149 43.9 0.990888382687927 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
28907078 28907078 PRJNA421571_P_NODE_99368_length_246_cov_0.890173_g96819_i0 PRJNA421571 99368 246 0.890173 2.18982558 Roseibacillus ishigakijimensis 454146 Bacteria Bacteria 42.4 0.0438   NR WP_377174485.1 454146 g96819 i0 39.7 0.707317073170732 58 27 65.9 3 83 244 12 65 WP_377174485.1 DUF6498-containing protein [Roseibacillus ishigakijimensis] diamond 174 42.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseibacillus Roseibacillus ishigakijimensis
30644239 30644239 PRJNA421571_P_NODE_90573_length_253_cov_1.500000_g88024_i0 PRJNA421571 90573 253 1.5 3.795 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 60.5 2.33e-8   NR MEN9653620.1 2026799 g88024 i0 49.4 0.936758893280632 79 30 86.6 3 251 33 560 634 MEN9653620.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 237 60.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31103141 31103141 PRJNA421571_P_NODE_100495_length_245_cov_0.895349_g97946_i0 PRJNA421571 100495 245 0.895349 2.19360505 Verrucomicrobiota 74201 Bacteria Bacteria 93.2 4.34e-20   NR PAW81921.1 1982324 g97946 i0 55.6 3.96734693877551 81 36 99.2 0 243 1 225 305 PAW81921.1 MAG: hypothetical protein B9S33_15770 [Pedosphaera sp. Tous-C6FEB] diamond 972 94 0.991489361702128 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera sp. Tous-C6FEB
31118071 31118071 PRJNA421571_P_NODE_99915_length_246_cov_0.861272_g97366_i0 PRJNA421571 99915 246 0.861272 2.11872912 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 43.1 0.027   NR HZL43826.1 2499141 g97366 i0 39.3 0.682926829268293 56 34 68.3 0 188 21 315 370 HZL43826.1 2-oxo acid dehydrogenase subunit E2 [Verrucomicrobiia bacterium] diamond 168 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
31451194 31451194 PRJNA421571_P_NODE_46416_length_414_cov_1.354839_g43868_i0 PRJNA421571 46416 414 1.354839 5.60903346 Luteolibacter 518753 Bacteria Bacteria 119 1.36e-29   NR MEY4242654.1 2026799 g43868 i0 85.7 3.08695652173913 70 10 50.7 0 4 213 233 302 MEY4242654.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 1278 120 0.991666666666667 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31529555 31529555 PRJNA421571_P_NODE_93456_length_250_cov_0.870056_g90907_i0 PRJNA421571 93456 250 0.870056 2.17514 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 47 9.94e-4   NR HEX3818319.1 2201154 g90907 i0 38.2 4.02 68 40 79.2 2 22 219 155 222 HEX3818319.1 CAP domain-containing protein [Chthoniobacterales bacterium] diamond 1005 47 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
31687444 31687444 PRJNA421571_P_NODE_105817_length_241_cov_1.833333_g103268_i0 PRJNA421571 105817 241 1.833333 4.41833253 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 79.7 1.15e-15   NR MFN2507733.1 2201154 g103268 i0 51.9 0.983402489626556 79 36 98.3 1 237 1 152 228 MFN2507733.1 hydroxymethylglutaryl-CoA lyase [Chthoniobacterales bacterium] diamond 237 79.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
32035499 32035499 PRJNA421571_P_NODE_36198_length_506_cov_1.854503_g33655_i0 PRJNA421571 36198 506 1.854503 9.38378518 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 46.2 0.0298   NR MEI6196998.1 2026799 g33655 i0 40.3 0.426877470355731 72 42 42.1 1 161 373 27 98 MEI6196998.1 glucoamylase family protein [Verrucomicrobiota bacterium] diamond 216 46.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32383560 32383560 PRJNA421571_P_NODE_105159_length_242_cov_0.911243_g102610_i0 PRJNA421571 105159 242 0.911243 2.20520806 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 50.1 8.1e-5   NR HCZ04326.1 2026801 g102610 i0 63.4 0.954545454545455 41 14 50.8 1 2 124 176 215 HCZ04326.1 hypothetical protein [Verrucomicrobiales bacterium] diamond 231 50.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
32825340 32825340 PRJNA421571_P_NODE_99040_length_246_cov_0.890173_g96491_i0 PRJNA421571 99040 246 0.890173 2.18982558 Opitutaceae bacterium 2006848 Bacteria Bacteria 112 1.8099999999999999e-28   NR MEO6246409.1 2006848 g96491 i0 64.6 0.963414634146341 79 28 96.3 0 3 239 182 260 MEO6246409.1 FkbM family methyltransferase [Opitutaceae bacterium] diamond 237 112 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;