RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA416866" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA416866 · 10 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4246701 4246701 PRJNA416866_P_NODE_264_length_1354_cov_6.601701_g205_i0 PRJNA416866 264 1354 6.601701 89.38703154 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 289 1.86e-90   NR RYD71398.1 2026800 g205 i0 44.8 0.786558345642541 355 183 77.3 6 1261 215 14 361 RYD71398.1 MAG: hypothetical protein EOP84_24945, partial [Verrucomicrobiaceae bacterium] diamond 1065 289 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
15111479 15111479 PRJNA416866_P_NODE_252_length_1378_cov_6.574032_g196_i0 PRJNA416866 252 1378 6.574032 90.59016096 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 434 1.6399999999999995e-147   NR RYD65414.1 2026800 g196 i0 76.3 0.61611030478955 283 65 61.6 1 318 1166 56 336 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 849 434 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
22760718 22760718 PRJNA416866_P_NODE_3398_length_363_cov_1.576159_g3255_i0 PRJNA416866 3398 363 1.576159 5.72145717 Verrucomicrobiales 48461 Bacteria Bacteria 166 9.569999999999999e-48   NR WP_347441213.1 2109375 g3255 i0 67.2 12.3884297520661 119 39 98.3 0 361 5 169 287 WP_347441213.1 NADPH-dependent aldehyde reductase Ahr [Rubritalea sp.] diamond 4497 167 0.994011976047904 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Rubritaleaceae Rubritalea Rubritalea sp.
26854338 26854338 PRJNA416866_P_NODE_6701_length_251_cov_1.473684_g6557_i0 PRJNA416866 6701 251 1.473684 3.69894684 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 94.7 2.06e-20   NR RYD77759.1 2026800 g6557 i0 60.2 0.99203187250996006 83 33 99.2 0 3 251 162 244 RYD77759.1 MAG: hypothetical protein EOP84_15150, partial [Verrucomicrobiaceae bacterium] diamond 249 94.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
27170173 27170173 PRJNA416866_P_NODE_4682_length_304_cov_1.950617_g4538_i0 PRJNA416866 4682 304 1.950617 5.92987568 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 103 3.94e-24   NR RYD81270.1 2026800 g4538 i0 78.9 0.5625 57 12 56.3 0 132 302 179 235 RYD81270.1 MAG: hypothetical protein EOP84_11265, partial [Verrucomicrobiaceae bacterium] diamond 171 103 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
29254309 29254309 PRJNA416866_P_NODE_5729_length_273_cov_1.547170_g5585_i0 PRJNA416866 5729 273 1.54717 4.2237741 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 46.6 0.00123   NR MCX6904291.1 2026799 g5585 i0 44.1 0.648351648351648 59 33 64.8 0 94 270 53 111 MCX6904291.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 177 46.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31655664 31655664 PRJNA416866_P_NODE_9897_length_208_cov_0.870748_g9753_i0 PRJNA416866 9897 208 0.870748 1.81115584 Opitutales bacterium 2026772 Bacteria Bacteria 91.7 1.02e-20   NR MBN2068425.1 2026772 g9753 i0 62.1 0.951923076923077 66 25 95.2 0 5 202 131 196 MBN2068425.1 hypothetical protein [Opitutales bacterium] diamond 198 91.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium
31782188 31782188 PRJNA416866_P_NODE_5717_length_273_cov_2.971698_g5573_i0 PRJNA416866 5717 273 2.971698 8.11273554 Akkermansia muciniphila 239935 Bacteria Bacteria 82 6.19e-18   NR WP_102713290.1 239935 g5573 i0 53.6 2.96703296703297 69 32 75.8 0 209 3 2 70 WP_102713290.1 RNA recognition motif domain-containing protein [Akkermansia muciniphila] diamond 810 82 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila
31877080 31877080 PRJNA416866_P_NODE_11097_length_203_cov_1.802817_g10953_i0 PRJNA416866 11097 203 1.802817 3.65971851 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 101 5.2599999999999997e-23   NR RYD77759.1 2026800 g10953 i0 77.6 0.990147783251232 67 15 99 0 1 201 478 544 RYD77759.1 MAG: hypothetical protein EOP84_15150, partial [Verrucomicrobiaceae bacterium] diamond 201 101 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
32257301 32257301 PRJNA416866_P_NODE_7058_length_244_cov_1.890710_g6914_i0 PRJNA416866 7058 244 1.89071 4.6133324 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 146 5.07e-43   NR RYD73503.1 2026800 g6914 i0 84 1.99180327868852 81 13 99.6 0 243 1 1 81 RYD73503.1 MAG: fructose-bisphosphate aldolase class I, partial [Verrucomicrobiaceae bacterium] diamond 486 146 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;