RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA416866" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA416866 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8736644 8736644 PRJNA416866_P_NODE_5447_length_280_cov_2.223744_g5303_i0 PRJNA416866 5447 280 2.223744 6.2264832 Spirochaetia 203692 Bacteria Bacteria 425 1.32e-114   NTclustered gi|559795264|ref|NR_104855.1| 34097 g5303 i0 93.972 83.3392857142857 282 15 100 1 1 280 379 98 Brevinema andersonii strain CT11616 16S ribosomal RNA, partial sequence blastn 23335 425 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brevinematales Brevinemataceae Brevinema Brevinema andersonii
11898452 11898452 PRJNA416866_P_NODE_10270_length_206_cov_1.655172_g10126_i0 PRJNA416866 10270 206 1.655172 3.40965432 Thiospirochaeta perfilievii 252967 Bacteria Bacteria 185 1.7e-42   NTclustered gi|1735508175|gb|CP035807.1| 252967 g10126 i0 88.125 124.320388349515 160 13 76 5 51 206 423512 423355 Thiospirochaeta perfilievii strain P chromosome, complete genome blastn 25610 185 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Thiospirochaeta Thiospirochaeta perfilievii
26775875 26775875 PRJNA416866_P_NODE_6901_length_247_cov_1.376344_g6757_i0 PRJNA416866 6901 247 1.376344 3.39956968 Pseudomonadati 3379134 Bacteria Bacteria 53.5 6.02e-6   NR MDR0502058.1 166 g6757 i0 64.9 2.61133603238866 37 13 44.9 0 3 113 19 55 MDR0502058.1 SEL1-like repeat protein [Treponema sp.] diamond 645 53.9 0.992578849721707 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
28970402 28970402 PRJNA416866_P_NODE_12028_length_198_cov_2.145985_g11884_i0 PRJNA416866 12028 198 2.145985 4.2490503 Treponema sp. 166 Bacteria Bacteria 45.8 0.00164   NR MDR2798268.1 166 g11884 i0 37.9 3.5 58 33 87.9 1 176 3 341 395 MDR2798268.1 beta-glucosidase [Treponema sp.] diamond 693 45.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
32699142 32699142 PRJNA416866_P_NODE_2940_length_394_cov_1.699700_g2797_i0 PRJNA416866 2940 394 1.6997 6.696818 Leptospiraceae bacterium 2026757 Bacteria Bacteria 45.8 0.00326   NR MCB1140660.1 2026757 g2797 i0 56.3 1.4010152284264 32 14 24.4 0 316 221 26 57 MCB1140660.1 cysteine rich repeat-containing protein [Leptospiraceae bacterium] diamond 552 45.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;