RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA416866" and tax_phylum = "Hemichordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Hemichordata · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA416866 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6797440 6797440 PRJNA416866_P_NODE_6606_length_253_cov_2.000000_g6462_i0 PRJNA416866 6606 253 2 5.06 Ptychodera flava 63121 Hemichordata other_Eukaryota 63.9 1.06e-5   NTclustered gi|2875720234|ref|XM_070677394.1| 63121 g6462 i0 100 2.04347826086957 34 0 13 0 102 135 1401 1368 PREDICTED: Ptychodera flava src substrate cortactin-like (LOC139115350), transcript variant X1, mRNA blastn 517 63.9 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
23371794 23371794 PRJNA416866_P_NODE_7999_length_228_cov_1.532934_g7855_i0 PRJNA416866 7999 228 1.532934 3.49508952 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 95.9 5.980000000000001e-21   NR XP_006816829.1 10224 g7855 i0 58.1 7.13157894736842 74 31 97.4 0 224 3 414 487 XP_006816829.1 PREDICTED: ATP-binding cassette sub-family A member 5-like [Saccoglossus kowalevskii] diamond 1626 96.7 0.991726990692865 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii
28134641 28134641 PRJNA416866_P_NODE_8925_length_215_cov_1.662338_g8781_i0 PRJNA416866 8925 215 1.662338 3.5740267 Opisthokonta 33154 Hemichordata other_Eukaryota 48.1 3.01e-4   NR XP_070531626.1 63121 g8781 i0 46.4 1.56279069767442 56 30 78.1 0 212 45 232 287 XP_070531626.1 large ribosomal subunit protein uL18-like [Ptychodera flava] diamond 336 48.5 0.991752577319588 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
30818938 30818938 PRJNA416866_P_NODE_5994_length_266_cov_1.560976_g5850_i0 PRJNA416866 5994 266 1.560976 4.15219616 Metazoa 33208 Hemichordata other_Eukaryota 102 4.68e-25   NR XP_070553107.1 63121 g5850 i0 60.5 4.91729323308271 86 33 95.9 1 257 3 1 86 XP_070553107.1 LOW QUALITY PROTEIN: large ribosomal subunit protein uL6-like [Ptychodera flava] diamond 1308 102 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;